Hb_007313_060

Information

Type -
Description -
Location Contig7313: 57017-58888
Sequence    

Annotation

kegg
ID rcu:RCOM_1429780
description Ubiquitin-protein ligase BRE1A, putative
nr
ID XP_012089138.1
description PREDICTED: paramyosin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23404 PE=4 SV=1
Gene Ontology
ID GO:0005783
description ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56023: 57083-57281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_060 0.0 - - PREDICTED: paramyosin [Jatropha curcas]
2 Hb_000395_090 0.1619174802 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
3 Hb_008092_080 0.1769954251 - - elongation factor ts, putative [Ricinus communis]
4 Hb_003427_080 0.1837109348 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
5 Hb_000053_120 0.1873321082 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
6 Hb_024714_080 0.1917929546 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
7 Hb_003077_130 0.2076921388 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
8 Hb_000296_080 0.210040642 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
9 Hb_004459_070 0.2109707455 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
10 Hb_004611_040 0.2134754808 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001488_260 0.2157783431 - - Alpha-2-macroglobulin [Gossypium arboreum]
12 Hb_006637_080 0.217354826 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
13 Hb_004785_070 0.2186637621 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
14 Hb_000237_210 0.2189863536 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002276_070 0.2207424506 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
16 Hb_001155_020 0.2209480758 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
17 Hb_090530_010 0.2228570197 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_005656_150 0.2231577036 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_143629_060 0.2235014308 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
20 Hb_001338_160 0.2246349311 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007313_060 Hb_007313_060 Hb_000395_090 Hb_000395_090 Hb_007313_060--Hb_000395_090 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_003427_080 Hb_003427_080 Hb_007313_060--Hb_003427_080 Hb_000053_120 Hb_000053_120 Hb_007313_060--Hb_000053_120 Hb_024714_080 Hb_024714_080 Hb_007313_060--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_007313_060--Hb_003077_130 Hb_000395_090--Hb_000053_120 Hb_072212_010 Hb_072212_010 Hb_000395_090--Hb_072212_010 Hb_000395_090--Hb_003427_080 Hb_005618_150 Hb_005618_150 Hb_000395_090--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_000395_090--Hb_001307_040 Hb_090530_010 Hb_090530_010 Hb_008092_080--Hb_090530_010 Hb_008092_080--Hb_024714_080 Hb_008092_080--Hb_003077_130 Hb_002681_080 Hb_002681_080 Hb_008092_080--Hb_002681_080 Hb_000069_490 Hb_000069_490 Hb_008092_080--Hb_000069_490 Hb_008092_080--Hb_003427_080 Hb_000402_170 Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_006062_030 Hb_006062_030 Hb_000053_120--Hb_006062_030 Hb_000053_120--Hb_024714_080 Hb_000053_120--Hb_003077_130 Hb_000053_120--Hb_000069_490 Hb_000053_120--Hb_000402_170 Hb_024714_080--Hb_003077_130 Hb_024714_080--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_024714_080--Hb_028707_110 Hb_000997_140 Hb_000997_140 Hb_024714_080--Hb_000997_140 Hb_003077_130--Hb_000069_490 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9992 8.4771 16.5851 6.54185 16.2368 22.4261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.30822 4.07128 4.34148 3.24921 142.063

CAGE analysis