Hb_000703_300

Information

Type -
Description -
Location Contig703: 292100-293882
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54961: 287365-291152 , PASA_asmbl_54962: 287497-291152 , PASA_asmbl_54963: 288840-291152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_300 0.0 - - -
2 Hb_003038_150 0.191349551 - - -
3 Hb_001766_040 0.205215314 - - chaperone clpb, putative [Ricinus communis]
4 Hb_001488_260 0.2136294897 - - Alpha-2-macroglobulin [Gossypium arboreum]
5 Hb_001366_160 0.216925357 - - -
6 Hb_000078_170 0.2189238435 - - -
7 Hb_000330_080 0.2254999344 - - auxilin, putative [Ricinus communis]
8 Hb_005962_010 0.2257547027 - - -
9 Hb_002249_210 0.2279156573 - - -
10 Hb_002276_070 0.2356022901 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
11 Hb_011574_010 0.2403420382 - - -
12 Hb_023675_030 0.2455788424 - - -
13 Hb_008123_010 0.2512069625 - - -
14 Hb_031658_040 0.2515552918 - - -
15 Hb_010488_010 0.2554068668 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
16 Hb_000236_450 0.2561188082 - - coated vesicle membrane protein, putative [Ricinus communis]
17 Hb_003626_080 0.2570617027 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002368_070 0.2670497323 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
19 Hb_008556_020 0.2672751892 - - -
20 Hb_002495_060 0.2727890796 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000703_300 Hb_000703_300 Hb_003038_150 Hb_003038_150 Hb_000703_300--Hb_003038_150 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001488_260 Hb_001488_260 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_000703_300--Hb_000330_080 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_003038_150--Hb_023675_030 Hb_002249_210 Hb_002249_210 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_008123_010 Hb_008123_010 Hb_003038_150--Hb_008123_010 Hb_000062_110 Hb_000062_110 Hb_001766_040--Hb_000062_110 Hb_001766_040--Hb_001366_160 Hb_006573_010 Hb_006573_010 Hb_001766_040--Hb_006573_010 Hb_010407_190 Hb_010407_190 Hb_001766_040--Hb_010407_190 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070 Hb_007313_060 Hb_007313_060 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_000463_030 Hb_000463_030 Hb_001488_260--Hb_000463_030 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_001488_260--Hb_003038_150 Hb_031658_040 Hb_031658_040 Hb_001366_160--Hb_031658_040 Hb_000139_150 Hb_000139_150 Hb_001366_160--Hb_000139_150 Hb_001366_160--Hb_002368_070 Hb_065408_010 Hb_065408_010 Hb_001366_160--Hb_065408_010 Hb_015026_080 Hb_015026_080 Hb_001366_160--Hb_015026_080 Hb_000078_170--Hb_005962_010 Hb_011639_150 Hb_011639_150 Hb_000078_170--Hb_011639_150 Hb_000078_170--Hb_000330_080 Hb_008556_020 Hb_008556_020 Hb_000078_170--Hb_008556_020 Hb_001709_130 Hb_001709_130 Hb_000078_170--Hb_001709_130 Hb_002311_230 Hb_002311_230 Hb_000078_170--Hb_002311_230 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_000330_080--Hb_001709_130 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00172 2.96766 1.04195 0.0794182 8.37936 2.04443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.218771 0.184448 1.95955 13.6318

CAGE analysis