Hb_011574_010

Information

Type -
Description -
Location Contig11574: 21731-23494
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011574_010 0.0 - - -
2 Hb_002249_210 0.1604920473 - - -
3 Hb_003038_150 0.1996031589 - - -
4 Hb_000703_300 0.2403420382 - - -
5 Hb_005656_150 0.2492131844 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
6 Hb_023675_030 0.2578466346 - - -
7 Hb_001488_260 0.2677516721 - - Alpha-2-macroglobulin [Gossypium arboreum]
8 Hb_003626_080 0.2755340283 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032733_010 0.2853924513 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
10 Hb_001031_050 0.2861242299 - - -
11 Hb_032208_080 0.2873892929 - - PREDICTED: phytoene synthase 2, chloroplastic-like [Jatropha curcas]
12 Hb_007810_070 0.2886878778 - - hypothetical protein VITISV_027174 [Vitis vinifera]
13 Hb_008092_080 0.2899198751 - - elongation factor ts, putative [Ricinus communis]
14 Hb_008123_010 0.2934365769 - - -
15 Hb_017225_010 0.2971564558 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
16 Hb_004010_020 0.2977251039 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_105581_010 0.3033100921 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_002276_070 0.3092657452 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
19 Hb_007313_060 0.3093083947 - - PREDICTED: paramyosin [Jatropha curcas]
20 Hb_000752_080 0.3094622068 - - -

Gene co-expression network

sample Hb_011574_010 Hb_011574_010 Hb_002249_210 Hb_002249_210 Hb_011574_010--Hb_002249_210 Hb_003038_150 Hb_003038_150 Hb_011574_010--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_011574_010--Hb_000703_300 Hb_005656_150 Hb_005656_150 Hb_011574_010--Hb_005656_150 Hb_023675_030 Hb_023675_030 Hb_011574_010--Hb_023675_030 Hb_001488_260 Hb_001488_260 Hb_011574_010--Hb_001488_260 Hb_002249_210--Hb_023675_030 Hb_002249_210--Hb_003038_150 Hb_002249_210--Hb_000703_300 Hb_000330_080 Hb_000330_080 Hb_002249_210--Hb_000330_080 Hb_008123_010 Hb_008123_010 Hb_002249_210--Hb_008123_010 Hb_003038_150--Hb_000703_300 Hb_003038_150--Hb_023675_030 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_003038_150--Hb_008123_010 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000703_300--Hb_000330_080 Hb_000012_440 Hb_000012_440 Hb_005656_150--Hb_000012_440 Hb_003032_090 Hb_003032_090 Hb_005656_150--Hb_003032_090 Hb_004987_030 Hb_004987_030 Hb_005656_150--Hb_004987_030 Hb_001338_150 Hb_001338_150 Hb_005656_150--Hb_001338_150 Hb_032733_010 Hb_032733_010 Hb_005656_150--Hb_032733_010 Hb_008092_080 Hb_008092_080 Hb_005656_150--Hb_008092_080 Hb_001461_020 Hb_001461_020 Hb_023675_030--Hb_001461_020 Hb_007313_060 Hb_007313_060 Hb_023675_030--Hb_007313_060 Hb_023675_030--Hb_000703_300 Hb_023675_030--Hb_032733_010 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_000463_030 Hb_000463_030 Hb_001488_260--Hb_000463_030 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_001488_260--Hb_003038_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.604958 0.328773 0.0929364 0.518198 2.94671 0.727825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.200484 0 0.620042 8.40808

CAGE analysis