Hb_000463_030

Information

Type -
Description -
Location Contig463: 13968-18040
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43841: 5432-18125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000463_030 0.0 - - -
2 Hb_105581_010 0.2202948863 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_001488_260 0.229222679 - - Alpha-2-macroglobulin [Gossypium arboreum]
4 Hb_001417_020 0.2471793953 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
5 Hb_008123_010 0.2647417855 - - -
6 Hb_154141_010 0.2701218795 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
7 Hb_004687_010 0.2704652897 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_004520_030 0.2755819842 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_031658_040 0.2771054391 - - -
10 Hb_001366_160 0.2830522843 - - -
11 Hb_000089_050 0.2860313261 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_006717_080 0.2942644722 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_010320_020 0.2969925821 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000236_450 0.2980237473 - - coated vesicle membrane protein, putative [Ricinus communis]
15 Hb_001341_020 0.2980308403 - - Uncharacterised protein [Bordetella pertussis]
16 Hb_090530_010 0.2990913836 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_012184_030 0.2991030996 - - -
18 Hb_003038_150 0.3022088811 - - -
19 Hb_015026_080 0.3102430842 - - -
20 Hb_000703_300 0.3126105088 - - -

Gene co-expression network

sample Hb_000463_030 Hb_000463_030 Hb_105581_010 Hb_105581_010 Hb_000463_030--Hb_105581_010 Hb_001488_260 Hb_001488_260 Hb_000463_030--Hb_001488_260 Hb_001417_020 Hb_001417_020 Hb_000463_030--Hb_001417_020 Hb_008123_010 Hb_008123_010 Hb_000463_030--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_000463_030--Hb_154141_010 Hb_004687_010 Hb_004687_010 Hb_000463_030--Hb_004687_010 Hb_000089_050 Hb_000089_050 Hb_105581_010--Hb_000089_050 Hb_105581_010--Hb_004687_010 Hb_012184_030 Hb_012184_030 Hb_105581_010--Hb_012184_030 Hb_148593_010 Hb_148593_010 Hb_105581_010--Hb_148593_010 Hb_017604_030 Hb_017604_030 Hb_105581_010--Hb_017604_030 Hb_000703_300 Hb_000703_300 Hb_001488_260--Hb_000703_300 Hb_007313_060 Hb_007313_060 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_004459_070 Hb_004459_070 Hb_001488_260--Hb_004459_070 Hb_003038_150 Hb_003038_150 Hb_001488_260--Hb_003038_150 Hb_001417_020--Hb_008123_010 Hb_001417_020--Hb_154141_010 Hb_000599_230 Hb_000599_230 Hb_001417_020--Hb_000599_230 Hb_090530_010 Hb_090530_010 Hb_001417_020--Hb_090530_010 Hb_031658_040 Hb_031658_040 Hb_001417_020--Hb_031658_040 Hb_012165_020 Hb_012165_020 Hb_001417_020--Hb_012165_020 Hb_008123_010--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_008123_010--Hb_031658_040 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_022958_010 Hb_022958_010 Hb_154141_010--Hb_022958_010 Hb_154141_010--Hb_000599_230 Hb_006905_030 Hb_006905_030 Hb_154141_010--Hb_006905_030 Hb_154141_010--Hb_090530_010 Hb_000010_290 Hb_000010_290 Hb_154141_010--Hb_000010_290 Hb_154141_010--Hb_007313_100 Hb_000574_140 Hb_000574_140 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181221 0.0699223 0.0221743 0 0.0783158 0.0822426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0639843 0 0 0.183036 0.50697

CAGE analysis