Hb_017604_030

Information

Type -
Description -
Location Contig17604: 23319-24007
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017604_030 0.0 - - -
2 Hb_000752_080 0.1925117939 - - -
3 Hb_031866_030 0.2416974879 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
4 Hb_002060_040 0.2437765849 - - putative polyprotein [Oryza sativa Japonica Group]
5 Hb_009152_030 0.2438924824 - - hypothetical protein L484_026849 [Morus notabilis]
6 Hb_033066_030 0.2439108731 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
7 Hb_000009_010 0.2500090721 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
8 Hb_012184_030 0.2597566265 - - -
9 Hb_001629_040 0.2604012364 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
10 Hb_105581_010 0.2846388813 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_000789_140 0.2872314436 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_007040_010 0.2873610721 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
13 Hb_017225_010 0.290141797 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
14 Hb_128193_010 0.2999862239 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
15 Hb_004520_030 0.3024547848 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_185839_010 0.30366709 - - -
17 Hb_006474_010 0.3075548259 - - hypothetical protein VITISV_032357 [Vitis vinifera]
18 Hb_000043_040 0.308193031 - - CTV.19 [Citrus trifoliata]
19 Hb_066206_010 0.3086314499 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003205_040 0.3088123983 - - epoxide hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_017604_030 Hb_017604_030 Hb_000752_080 Hb_000752_080 Hb_017604_030--Hb_000752_080 Hb_031866_030 Hb_031866_030 Hb_017604_030--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_017604_030--Hb_002060_040 Hb_009152_030 Hb_009152_030 Hb_017604_030--Hb_009152_030 Hb_033066_030 Hb_033066_030 Hb_017604_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_017604_030--Hb_000009_010 Hb_007040_010 Hb_007040_010 Hb_000752_080--Hb_007040_010 Hb_012184_030 Hb_012184_030 Hb_000752_080--Hb_012184_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_004010_020 Hb_004010_020 Hb_000752_080--Hb_004010_020 Hb_008758_010 Hb_008758_010 Hb_000752_080--Hb_008758_010 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_009152_030 Hb_031866_030--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_031866_030--Hb_001629_040 Hb_000789_140 Hb_000789_140 Hb_031866_030--Hb_000789_140 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_009152_030 Hb_002060_040--Hb_000009_010 Hb_002060_040--Hb_001629_040 Hb_002060_040--Hb_000789_140 Hb_009152_030--Hb_033066_030 Hb_009152_030--Hb_000009_010 Hb_009152_030--Hb_000789_140 Hb_009152_030--Hb_001629_040 Hb_033066_030--Hb_000009_010 Hb_033066_030--Hb_001629_040 Hb_033066_030--Hb_000789_140 Hb_000009_010--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_000009_010--Hb_128193_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.756626 0 0 0 0.49032 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.647855 2.5577

CAGE analysis