Hb_008758_010

Information

Type -
Description -
Location Contig8758: 4479-12761
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID A4FUB7
description Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008758_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_007040_010 0.1745847634 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
3 Hb_004010_020 0.2352834314 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_000752_080 0.2509181782 - - -
5 Hb_012404_010 0.2669595321 - - -
6 Hb_031691_010 0.2710946948 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_027890_010 0.2721778615 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
8 Hb_186440_010 0.2847487127 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_030627_050 0.3111784462 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
10 Hb_005451_020 0.3115165841 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
11 Hb_005344_010 0.3139083859 - - PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
12 Hb_008206_070 0.3191673849 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
13 Hb_097889_010 0.3223280058 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
14 Hb_011537_090 0.3233872768 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
15 Hb_009188_010 0.32541645 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_008976_010 0.3262463824 - - -
17 Hb_000710_120 0.3264764702 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
18 Hb_001309_030 0.3266273148 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_004019_100 0.3267080822 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
20 Hb_001972_020 0.327146633 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_008758_010 Hb_008758_010 Hb_007040_010 Hb_007040_010 Hb_008758_010--Hb_007040_010 Hb_004010_020 Hb_004010_020 Hb_008758_010--Hb_004010_020 Hb_000752_080 Hb_000752_080 Hb_008758_010--Hb_000752_080 Hb_012404_010 Hb_012404_010 Hb_008758_010--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_008758_010--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_008758_010--Hb_027890_010 Hb_007040_010--Hb_000752_080 Hb_007040_010--Hb_004010_020 Hb_000059_120 Hb_000059_120 Hb_007040_010--Hb_000059_120 Hb_012184_030 Hb_012184_030 Hb_007040_010--Hb_012184_030 Hb_008206_070 Hb_008206_070 Hb_007040_010--Hb_008206_070 Hb_004010_020--Hb_000752_080 Hb_061940_010 Hb_061940_010 Hb_004010_020--Hb_061940_010 Hb_186440_010 Hb_186440_010 Hb_004010_020--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_004010_020--Hb_097889_010 Hb_017604_030 Hb_017604_030 Hb_000752_080--Hb_017604_030 Hb_000752_080--Hb_012184_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_012404_010--Hb_031691_010 Hb_012404_010--Hb_027890_010 Hb_012404_010--Hb_186440_010 Hb_012404_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_012404_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_012404_010--Hb_009188_010 Hb_031691_010--Hb_027890_010 Hb_031691_010--Hb_186440_010 Hb_031691_010--Hb_097889_010 Hb_031691_010--Hb_011537_090 Hb_031691_010--Hb_009188_010 Hb_027890_010--Hb_186440_010 Hb_027890_010--Hb_097889_010 Hb_027890_010--Hb_011537_090 Hb_027890_010--Hb_009188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00507169 0 0 0 0.0145664 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0193635

CAGE analysis