Hb_000059_120

Information

Type -
Description -
Location Contig59: 107674-108977
Sequence    

Annotation

kegg
ID mtr:MTR_3g043850
description hypothetical protein
nr
ID BAJ53217.1
description JHL22C18.10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_120 0.0 - - JHL22C18.10 [Jatropha curcas]
2 Hb_008206_070 0.1471882501 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
3 Hb_153636_010 0.2568837444 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
4 Hb_007040_010 0.2619248361 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
5 Hb_003228_090 0.2848842685 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
6 Hb_008643_050 0.3007343968 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_001390_080 0.3010367768 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_000628_010 0.3027243176 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
9 Hb_000752_080 0.3131000781 - - -
10 Hb_012184_030 0.3261235969 - - -
11 Hb_000608_330 0.3280644363 - - Zeamatin precursor, putative [Ricinus communis]
12 Hb_027380_240 0.3293269668 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
13 Hb_004738_060 0.3346349386 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
14 Hb_008408_050 0.3372490557 - - -
15 Hb_002042_240 0.3445519841 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_079902_030 0.345200572 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002850_030 0.345949961 - - -
18 Hb_016354_010 0.3470551643 - - -
19 Hb_012235_010 0.3527081015 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_008758_010 0.3537495144 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_000059_120 Hb_000059_120 Hb_008206_070 Hb_008206_070 Hb_000059_120--Hb_008206_070 Hb_153636_010 Hb_153636_010 Hb_000059_120--Hb_153636_010 Hb_007040_010 Hb_007040_010 Hb_000059_120--Hb_007040_010 Hb_003228_090 Hb_003228_090 Hb_000059_120--Hb_003228_090 Hb_008643_050 Hb_008643_050 Hb_000059_120--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_000059_120--Hb_001390_080 Hb_027380_240 Hb_027380_240 Hb_008206_070--Hb_027380_240 Hb_008206_070--Hb_007040_010 Hb_008206_070--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_008206_070--Hb_000628_010 Hb_008206_070--Hb_008643_050 Hb_153636_010--Hb_003228_090 Hb_153636_010--Hb_008643_050 Hb_153636_010--Hb_001390_080 Hb_153636_010--Hb_000628_010 Hb_008408_050 Hb_008408_050 Hb_153636_010--Hb_008408_050 Hb_016354_010 Hb_016354_010 Hb_153636_010--Hb_016354_010 Hb_000752_080 Hb_000752_080 Hb_007040_010--Hb_000752_080 Hb_008758_010 Hb_008758_010 Hb_007040_010--Hb_008758_010 Hb_004010_020 Hb_004010_020 Hb_007040_010--Hb_004010_020 Hb_012184_030 Hb_012184_030 Hb_007040_010--Hb_012184_030 Hb_000608_330 Hb_000608_330 Hb_003228_090--Hb_000608_330 Hb_003228_090--Hb_001390_080 Hb_003228_090--Hb_000628_010 Hb_003228_090--Hb_008643_050 Hb_000627_010 Hb_000627_010 Hb_003228_090--Hb_000627_010 Hb_008643_050--Hb_000628_010 Hb_008643_050--Hb_001390_080 Hb_008643_050--Hb_000627_010 Hb_008643_050--Hb_000608_330 Hb_000115_040 Hb_000115_040 Hb_008643_050--Hb_000115_040 Hb_001390_080--Hb_000628_010 Hb_001390_080--Hb_000608_330 Hb_001390_080--Hb_000627_010 Hb_001390_080--Hb_000115_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0833885 0 0.0255727 0 0.0323413 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.1243

CAGE analysis