Hb_000115_040

Information

Type -
Description -
Location Contig115: 37809-38093
Sequence    

Annotation

kegg
ID rcu:RCOM_0030040
description hypothetical protein
nr
ID XP_002531626.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUA1
description CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana GN=CLE27 PE=2 SV=1
trembl
ID B9T057
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0030040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000627_010 0.020933825 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_000628_010 0.1143634902 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
4 Hb_001390_080 0.1169326476 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_008643_050 0.1186740745 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_000608_330 0.1285853975 - - Zeamatin precursor, putative [Ricinus communis]
7 Hb_184798_050 0.2143371613 - - -
8 Hb_007926_030 0.2143411303 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
9 Hb_147503_020 0.2143591552 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_006332_050 0.2143670503 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
11 Hb_058242_010 0.2143678157 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
12 Hb_000977_230 0.2143775927 - - FT-like protein [Betula luminifera]
13 Hb_005305_180 0.2143865234 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
14 Hb_001761_090 0.2144507767 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
15 Hb_001060_130 0.2144678427 - - -
16 Hb_124016_010 0.2145565515 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
17 Hb_001357_320 0.2145896371 - - GRP3S, putative [Ricinus communis]
18 Hb_003608_020 0.2147259777 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
19 Hb_034691_020 0.2147618571 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_003007_020 0.214797848 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_040 Hb_000115_040 Hb_000627_010 Hb_000627_010 Hb_000115_040--Hb_000627_010 Hb_000628_010 Hb_000628_010 Hb_000115_040--Hb_000628_010 Hb_001390_080 Hb_001390_080 Hb_000115_040--Hb_001390_080 Hb_008643_050 Hb_008643_050 Hb_000115_040--Hb_008643_050 Hb_000608_330 Hb_000608_330 Hb_000115_040--Hb_000608_330 Hb_184798_050 Hb_184798_050 Hb_000115_040--Hb_184798_050 Hb_000627_010--Hb_000628_010 Hb_000627_010--Hb_001390_080 Hb_000627_010--Hb_008643_050 Hb_000627_010--Hb_000608_330 Hb_003693_060 Hb_003693_060 Hb_000627_010--Hb_003693_060 Hb_000628_010--Hb_008643_050 Hb_000628_010--Hb_001390_080 Hb_000628_010--Hb_000608_330 Hb_003228_090 Hb_003228_090 Hb_000628_010--Hb_003228_090 Hb_001390_080--Hb_008643_050 Hb_001390_080--Hb_000608_330 Hb_001390_080--Hb_003228_090 Hb_008643_050--Hb_000608_330 Hb_008643_050--Hb_003228_090 Hb_000608_330--Hb_003228_090 Hb_007926_030 Hb_007926_030 Hb_184798_050--Hb_007926_030 Hb_000977_230 Hb_000977_230 Hb_184798_050--Hb_000977_230 Hb_147503_020 Hb_147503_020 Hb_184798_050--Hb_147503_020 Hb_006332_050 Hb_006332_050 Hb_184798_050--Hb_006332_050 Hb_058242_010 Hb_058242_010 Hb_184798_050--Hb_058242_010 Hb_005305_180 Hb_005305_180 Hb_184798_050--Hb_005305_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181292 0 0.343658 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.51443

CAGE analysis