Hb_005305_180

Information

Type transcription factor
Description TF Family: NAC
Location Contig5305: 97607-98306
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020620mg
description hypothetical protein
nr
ID XP_012483251.1
description PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
swissprot
ID Q8H4S4
description NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1
trembl
ID A0A0D2RV76
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G127700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_180 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
2 Hb_058242_010 0.0009793646 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
3 Hb_006332_050 0.0010248526 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
4 Hb_147503_020 0.0015310034 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_001761_090 0.0024123393 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
6 Hb_124016_010 0.0051855821 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
7 Hb_184798_050 0.0056225979 - - -
8 Hb_001357_320 0.005906636 - - GRP3S, putative [Ricinus communis]
9 Hb_007926_030 0.0063617991 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
10 Hb_000977_230 0.0091300293 - - FT-like protein [Betula luminifera]
11 Hb_001060_130 0.0124958429 - - -
12 Hb_081874_010 0.0141117593 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
13 Hb_003608_020 0.0180356279 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
14 Hb_034691_020 0.0186315774 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
15 Hb_003007_020 0.0192047273 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_004557_020 0.0207234651 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
17 Hb_012398_020 0.0209764766 - - hypothetical protein RCOM_0641040 [Ricinus communis]
18 Hb_058844_010 0.0216607115 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
19 Hb_013093_010 0.0218283001 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
20 Hb_000417_010 0.022001316 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005305_180 Hb_005305_180 Hb_058242_010 Hb_058242_010 Hb_005305_180--Hb_058242_010 Hb_006332_050 Hb_006332_050 Hb_005305_180--Hb_006332_050 Hb_147503_020 Hb_147503_020 Hb_005305_180--Hb_147503_020 Hb_001761_090 Hb_001761_090 Hb_005305_180--Hb_001761_090 Hb_124016_010 Hb_124016_010 Hb_005305_180--Hb_124016_010 Hb_184798_050 Hb_184798_050 Hb_005305_180--Hb_184798_050 Hb_058242_010--Hb_006332_050 Hb_058242_010--Hb_147503_020 Hb_058242_010--Hb_001761_090 Hb_058242_010--Hb_184798_050 Hb_007926_030 Hb_007926_030 Hb_058242_010--Hb_007926_030 Hb_006332_050--Hb_147503_020 Hb_006332_050--Hb_001761_090 Hb_006332_050--Hb_184798_050 Hb_006332_050--Hb_007926_030 Hb_147503_020--Hb_001761_090 Hb_147503_020--Hb_184798_050 Hb_147503_020--Hb_007926_030 Hb_001761_090--Hb_124016_010 Hb_001357_320 Hb_001357_320 Hb_001761_090--Hb_001357_320 Hb_124016_010--Hb_001357_320 Hb_124016_010--Hb_058242_010 Hb_124016_010--Hb_006332_050 Hb_124016_010--Hb_147503_020 Hb_184798_050--Hb_007926_030 Hb_000977_230 Hb_000977_230 Hb_184798_050--Hb_000977_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0404254 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.173073

CAGE analysis