Hb_000977_230

Information

Type -
Description -
Location Contig977: 195859-198318
Sequence    

Annotation

kegg
ID tcc:TCM_023287
description PEBP (phosphatidylethanolamine-binding protein) family protein
nr
ID AFK91525.1
description FT-like protein [Betula luminifera]
swissprot
ID Q93WI9
description Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1
trembl
ID I3W7E5
description FT-like protein OS=Betula luminifera GN=FTL PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_230 0.0 - - FT-like protein [Betula luminifera]
2 Hb_007926_030 0.0027683596 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
3 Hb_001060_130 0.0033661261 - - -
4 Hb_184798_050 0.0035075761 - - -
5 Hb_147503_020 0.0075991106 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
6 Hb_006332_050 0.0081052372 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
7 Hb_058242_010 0.0081507227 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
8 Hb_003608_020 0.0089068042 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
9 Hb_005305_180 0.0091300293 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
10 Hb_034691_020 0.0095028784 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
11 Hb_003007_020 0.0100761535 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
12 Hb_001761_090 0.0115421673 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
13 Hb_004557_020 0.0115952482 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
14 Hb_012398_020 0.0118483228 - - hypothetical protein RCOM_0641040 [Ricinus communis]
15 Hb_013093_010 0.0127003661 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_029613_010 0.0132852134 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000383_040 0.0143073713 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
18 Hb_124016_010 0.0143150774 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
19 Hb_000612_060 0.0144278285 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_001357_320 0.0150360272 - - GRP3S, putative [Ricinus communis]

Gene co-expression network

sample Hb_000977_230 Hb_000977_230 Hb_007926_030 Hb_007926_030 Hb_000977_230--Hb_007926_030 Hb_001060_130 Hb_001060_130 Hb_000977_230--Hb_001060_130 Hb_184798_050 Hb_184798_050 Hb_000977_230--Hb_184798_050 Hb_147503_020 Hb_147503_020 Hb_000977_230--Hb_147503_020 Hb_006332_050 Hb_006332_050 Hb_000977_230--Hb_006332_050 Hb_058242_010 Hb_058242_010 Hb_000977_230--Hb_058242_010 Hb_007926_030--Hb_184798_050 Hb_007926_030--Hb_147503_020 Hb_007926_030--Hb_006332_050 Hb_007926_030--Hb_058242_010 Hb_007926_030--Hb_001060_130 Hb_003608_020 Hb_003608_020 Hb_001060_130--Hb_003608_020 Hb_034691_020 Hb_034691_020 Hb_001060_130--Hb_034691_020 Hb_003007_020 Hb_003007_020 Hb_001060_130--Hb_003007_020 Hb_001060_130--Hb_184798_050 Hb_184798_050--Hb_147503_020 Hb_184798_050--Hb_006332_050 Hb_184798_050--Hb_058242_010 Hb_005305_180 Hb_005305_180 Hb_184798_050--Hb_005305_180 Hb_147503_020--Hb_006332_050 Hb_147503_020--Hb_058242_010 Hb_147503_020--Hb_005305_180 Hb_001761_090 Hb_001761_090 Hb_147503_020--Hb_001761_090 Hb_006332_050--Hb_058242_010 Hb_006332_050--Hb_005305_180 Hb_006332_050--Hb_001761_090 Hb_058242_010--Hb_005305_180 Hb_058242_010--Hb_001761_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0403581 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.182619

CAGE analysis