Hb_007926_030

Information

Type transcription factor
Description TF Family: OFP
Location Contig7926: 46710-47384
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22190g
description POPTRDRAFT_653681; hypothetical protein
nr
ID XP_011046889.1
description PREDICTED: transcription repressor OFP13-like [Populus euphratica]
swissprot
ID Q9FMC8
description Transcription repressor OFP13 OS=Arabidopsis thaliana GN=OFP13 PE=2 SV=1
trembl
ID B9HBR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58420: 47278-47540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007926_030 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
2 Hb_184798_050 0.0007392223 - - -
3 Hb_000977_230 0.0027683596 - - FT-like protein [Betula luminifera]
4 Hb_147503_020 0.004830833 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_006332_050 0.0053369741 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
6 Hb_058242_010 0.0053824611 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
7 Hb_001060_130 0.0061344386 - - -
8 Hb_005305_180 0.0063617991 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
9 Hb_001761_090 0.0087740323 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
10 Hb_124016_010 0.0115470826 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
11 Hb_003608_020 0.0116749244 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
12 Hb_001357_320 0.0122680741 - - GRP3S, putative [Ricinus communis]
13 Hb_034691_020 0.0122709692 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
14 Hb_003007_020 0.0128442144 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_004557_020 0.0143632223 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
16 Hb_012398_020 0.0146162814 - - hypothetical protein RCOM_0641040 [Ricinus communis]
17 Hb_013093_010 0.0154682701 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
18 Hb_029613_010 0.0160530778 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000383_040 0.0170751626 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_000612_060 0.0171956109 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_007926_030 Hb_007926_030 Hb_184798_050 Hb_184798_050 Hb_007926_030--Hb_184798_050 Hb_000977_230 Hb_000977_230 Hb_007926_030--Hb_000977_230 Hb_147503_020 Hb_147503_020 Hb_007926_030--Hb_147503_020 Hb_006332_050 Hb_006332_050 Hb_007926_030--Hb_006332_050 Hb_058242_010 Hb_058242_010 Hb_007926_030--Hb_058242_010 Hb_001060_130 Hb_001060_130 Hb_007926_030--Hb_001060_130 Hb_184798_050--Hb_000977_230 Hb_184798_050--Hb_147503_020 Hb_184798_050--Hb_006332_050 Hb_184798_050--Hb_058242_010 Hb_005305_180 Hb_005305_180 Hb_184798_050--Hb_005305_180 Hb_000977_230--Hb_001060_130 Hb_000977_230--Hb_147503_020 Hb_000977_230--Hb_006332_050 Hb_000977_230--Hb_058242_010 Hb_147503_020--Hb_006332_050 Hb_147503_020--Hb_058242_010 Hb_147503_020--Hb_005305_180 Hb_001761_090 Hb_001761_090 Hb_147503_020--Hb_001761_090 Hb_006332_050--Hb_058242_010 Hb_006332_050--Hb_005305_180 Hb_006332_050--Hb_001761_090 Hb_058242_010--Hb_005305_180 Hb_058242_010--Hb_001761_090 Hb_003608_020 Hb_003608_020 Hb_001060_130--Hb_003608_020 Hb_034691_020 Hb_034691_020 Hb_001060_130--Hb_034691_020 Hb_003007_020 Hb_003007_020 Hb_001060_130--Hb_003007_020 Hb_001060_130--Hb_184798_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0592244 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.263501

CAGE analysis