Hb_058242_010

Information

Type -
Description -
Location Contig58242: 1544-2107
Sequence    

Annotation

kegg
ID rcu:RCOM_1339580
description polygalacturonase, putative
nr
ID XP_012477839.1
description PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID B9RNJ6
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1339580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058242_010 0.0 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
2 Hb_006332_050 4.5488e-05 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
3 Hb_147503_020 0.0005516395 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_005305_180 0.0009793646 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
5 Hb_001761_090 0.0033916977 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
6 Hb_184798_050 0.0046432535 - - -
7 Hb_007926_030 0.0053824611 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
8 Hb_124016_010 0.0061649224 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
9 Hb_001357_320 0.0068859697 - - GRP3S, putative [Ricinus communis]
10 Hb_000977_230 0.0081507227 - - FT-like protein [Betula luminifera]
11 Hb_001060_130 0.0115165912 - - -
12 Hb_081874_010 0.0150909645 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
13 Hb_003608_020 0.0170565072 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
14 Hb_034691_020 0.0176524739 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
15 Hb_003007_020 0.0182256409 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_004557_020 0.0197444265 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
17 Hb_012398_020 0.0199974465 - - hypothetical protein RCOM_0641040 [Ricinus communis]
18 Hb_013093_010 0.0208492989 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
19 Hb_029613_010 0.0214340092 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000383_040 0.0224559158 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_058242_010 Hb_058242_010 Hb_006332_050 Hb_006332_050 Hb_058242_010--Hb_006332_050 Hb_147503_020 Hb_147503_020 Hb_058242_010--Hb_147503_020 Hb_005305_180 Hb_005305_180 Hb_058242_010--Hb_005305_180 Hb_001761_090 Hb_001761_090 Hb_058242_010--Hb_001761_090 Hb_184798_050 Hb_184798_050 Hb_058242_010--Hb_184798_050 Hb_007926_030 Hb_007926_030 Hb_058242_010--Hb_007926_030 Hb_006332_050--Hb_147503_020 Hb_006332_050--Hb_005305_180 Hb_006332_050--Hb_001761_090 Hb_006332_050--Hb_184798_050 Hb_006332_050--Hb_007926_030 Hb_147503_020--Hb_005305_180 Hb_147503_020--Hb_001761_090 Hb_147503_020--Hb_184798_050 Hb_147503_020--Hb_007926_030 Hb_005305_180--Hb_001761_090 Hb_124016_010 Hb_124016_010 Hb_005305_180--Hb_124016_010 Hb_005305_180--Hb_184798_050 Hb_001761_090--Hb_124016_010 Hb_001357_320 Hb_001357_320 Hb_001761_090--Hb_001357_320 Hb_184798_050--Hb_007926_030 Hb_000977_230 Hb_000977_230 Hb_184798_050--Hb_000977_230 Hb_007926_030--Hb_000977_230 Hb_001060_130 Hb_001060_130 Hb_007926_030--Hb_001060_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0387413 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.166843

CAGE analysis