Hb_001357_320

Information

Type -
Description -
Location Contig1357: 241366-241851
Sequence    

Annotation

kegg
ID rcu:RCOM_1303490
description GRP3S, putative
nr
ID XP_002529919.1
description GRP3S, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVA0
description GRP3S, putative OS=Ricinus communis GN=RCOM_1303490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_320 0.0 - - GRP3S, putative [Ricinus communis]
2 Hb_124016_010 0.0007210708 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
3 Hb_001761_090 0.0034943351 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
4 Hb_005305_180 0.005906636 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
5 Hb_058242_010 0.0068859697 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
6 Hb_006332_050 0.006931456 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
7 Hb_147503_020 0.0074375872 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_081874_010 0.0082056397 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
9 Hb_184798_050 0.0115289345 - - -
10 Hb_007926_030 0.0122680741 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
11 Hb_000977_230 0.0150360272 - - FT-like protein [Betula luminifera]
12 Hb_058844_010 0.0157555774 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_000417_010 0.0160962375 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
14 Hb_001060_130 0.0184014036 - - -
15 Hb_003608_020 0.0239402245 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
16 Hb_034691_020 0.0245360519 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
17 Hb_183420_010 0.0247609084 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
18 Hb_003007_020 0.0251090809 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
19 Hb_004557_020 0.026627482 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
20 Hb_012398_020 0.0268804351 - - hypothetical protein RCOM_0641040 [Ricinus communis]

Gene co-expression network

sample Hb_001357_320 Hb_001357_320 Hb_124016_010 Hb_124016_010 Hb_001357_320--Hb_124016_010 Hb_001761_090 Hb_001761_090 Hb_001357_320--Hb_001761_090 Hb_005305_180 Hb_005305_180 Hb_001357_320--Hb_005305_180 Hb_058242_010 Hb_058242_010 Hb_001357_320--Hb_058242_010 Hb_006332_050 Hb_006332_050 Hb_001357_320--Hb_006332_050 Hb_147503_020 Hb_147503_020 Hb_001357_320--Hb_147503_020 Hb_124016_010--Hb_001761_090 Hb_124016_010--Hb_005305_180 Hb_124016_010--Hb_058242_010 Hb_124016_010--Hb_006332_050 Hb_124016_010--Hb_147503_020 Hb_001761_090--Hb_005305_180 Hb_001761_090--Hb_058242_010 Hb_001761_090--Hb_006332_050 Hb_001761_090--Hb_147503_020 Hb_005305_180--Hb_058242_010 Hb_005305_180--Hb_006332_050 Hb_005305_180--Hb_147503_020 Hb_184798_050 Hb_184798_050 Hb_005305_180--Hb_184798_050 Hb_058242_010--Hb_006332_050 Hb_058242_010--Hb_147503_020 Hb_058242_010--Hb_184798_050 Hb_007926_030 Hb_007926_030 Hb_058242_010--Hb_007926_030 Hb_006332_050--Hb_147503_020 Hb_006332_050--Hb_184798_050 Hb_006332_050--Hb_007926_030 Hb_147503_020--Hb_184798_050 Hb_147503_020--Hb_007926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.136928 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.565891

CAGE analysis