Hb_001060_130

Information

Type -
Description -
Location Contig1060: 172860-173531
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001060_130 0.0 - - -
2 Hb_000977_230 0.0033661261 - - FT-like protein [Betula luminifera]
3 Hb_003608_020 0.005540818 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
4 Hb_007926_030 0.0061344386 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
5 Hb_034691_020 0.0061369177 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
6 Hb_003007_020 0.0067102194 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
7 Hb_184798_050 0.0068736354 - - -
8 Hb_004557_020 0.0082293938 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
9 Hb_012398_020 0.008482483 - - hypothetical protein RCOM_0641040 [Ricinus communis]
10 Hb_013093_010 0.0093345782 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
11 Hb_029613_010 0.0099194637 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000383_040 0.0109416931 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_147503_020 0.0109650078 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
14 Hb_000612_060 0.0110621592 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_006332_050 0.0114711081 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
16 Hb_058242_010 0.0115165912 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
17 Hb_005305_180 0.0124958429 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
18 Hb_004870_030 0.0138838456 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_001761_090 0.0149078241 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
20 Hb_011994_050 0.0151159193 - - multicopper oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001060_130 Hb_001060_130 Hb_000977_230 Hb_000977_230 Hb_001060_130--Hb_000977_230 Hb_003608_020 Hb_003608_020 Hb_001060_130--Hb_003608_020 Hb_007926_030 Hb_007926_030 Hb_001060_130--Hb_007926_030 Hb_034691_020 Hb_034691_020 Hb_001060_130--Hb_034691_020 Hb_003007_020 Hb_003007_020 Hb_001060_130--Hb_003007_020 Hb_184798_050 Hb_184798_050 Hb_001060_130--Hb_184798_050 Hb_000977_230--Hb_007926_030 Hb_000977_230--Hb_184798_050 Hb_147503_020 Hb_147503_020 Hb_000977_230--Hb_147503_020 Hb_006332_050 Hb_006332_050 Hb_000977_230--Hb_006332_050 Hb_058242_010 Hb_058242_010 Hb_000977_230--Hb_058242_010 Hb_003608_020--Hb_034691_020 Hb_003608_020--Hb_003007_020 Hb_004557_020 Hb_004557_020 Hb_003608_020--Hb_004557_020 Hb_012398_020 Hb_012398_020 Hb_003608_020--Hb_012398_020 Hb_013093_010 Hb_013093_010 Hb_003608_020--Hb_013093_010 Hb_029613_010 Hb_029613_010 Hb_003608_020--Hb_029613_010 Hb_007926_030--Hb_184798_050 Hb_007926_030--Hb_147503_020 Hb_007926_030--Hb_006332_050 Hb_007926_030--Hb_058242_010 Hb_034691_020--Hb_003007_020 Hb_034691_020--Hb_004557_020 Hb_034691_020--Hb_012398_020 Hb_034691_020--Hb_013093_010 Hb_034691_020--Hb_029613_010 Hb_003007_020--Hb_004557_020 Hb_003007_020--Hb_012398_020 Hb_003007_020--Hb_013093_010 Hb_003007_020--Hb_029613_010 Hb_184798_050--Hb_147503_020 Hb_184798_050--Hb_006332_050 Hb_184798_050--Hb_058242_010 Hb_005305_180 Hb_005305_180 Hb_184798_050--Hb_005305_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0343068 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.158477

CAGE analysis