Hb_003228_090

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3228: 147213-147836
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20940g
description POPTRDRAFT_762809; hypothetical protein
nr
ID XP_012076064.1
description PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003228_090 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
2 Hb_000608_330 0.1263652801 - - Zeamatin precursor, putative [Ricinus communis]
3 Hb_001390_080 0.1548135263 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_153636_010 0.1600599945 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
5 Hb_000628_010 0.1613398742 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
6 Hb_008643_050 0.1616118937 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_000627_010 0.2371912211 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_000115_040 0.2412367827 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008408_050 0.2634035609 - - -
10 Hb_134546_010 0.2644060007 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
11 Hb_004724_050 0.2740036614 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
12 Hb_000059_120 0.2848842685 - - JHL22C18.10 [Jatropha curcas]
13 Hb_012090_020 0.2901693497 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
14 Hb_000049_220 0.2939621265 - - ammonium transporter, putative [Ricinus communis]
15 Hb_001579_210 0.2965812914 - - conserved hypothetical protein [Ricinus communis]
16 Hb_081703_020 0.3071233142 - - -
17 Hb_008206_070 0.3139872609 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
18 Hb_000935_020 0.324033008 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
19 Hb_032733_020 0.3296940215 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
20 Hb_027380_240 0.3316264759 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003228_090 Hb_003228_090 Hb_000608_330 Hb_000608_330 Hb_003228_090--Hb_000608_330 Hb_001390_080 Hb_001390_080 Hb_003228_090--Hb_001390_080 Hb_153636_010 Hb_153636_010 Hb_003228_090--Hb_153636_010 Hb_000628_010 Hb_000628_010 Hb_003228_090--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_003228_090--Hb_008643_050 Hb_000627_010 Hb_000627_010 Hb_003228_090--Hb_000627_010 Hb_000608_330--Hb_001390_080 Hb_000608_330--Hb_000628_010 Hb_000608_330--Hb_008643_050 Hb_000115_040 Hb_000115_040 Hb_000608_330--Hb_000115_040 Hb_000608_330--Hb_000627_010 Hb_001390_080--Hb_000628_010 Hb_001390_080--Hb_008643_050 Hb_001390_080--Hb_000627_010 Hb_001390_080--Hb_000115_040 Hb_153636_010--Hb_008643_050 Hb_153636_010--Hb_001390_080 Hb_153636_010--Hb_000628_010 Hb_008408_050 Hb_008408_050 Hb_153636_010--Hb_008408_050 Hb_016354_010 Hb_016354_010 Hb_153636_010--Hb_016354_010 Hb_000628_010--Hb_008643_050 Hb_000628_010--Hb_000627_010 Hb_000628_010--Hb_000115_040 Hb_008643_050--Hb_000627_010 Hb_008643_050--Hb_000115_040 Hb_000627_010--Hb_000115_040 Hb_003693_060 Hb_003693_060 Hb_000627_010--Hb_003693_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822184 0 0.0664152 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.145845

CAGE analysis