Hb_000628_010

Information

Type -
Description -
Location Contig628: 34687-46130
Sequence    

Annotation

kegg
ID cit:102610671
description uncharacterized LOC102610671
nr
ID XP_012481068.1
description PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID I7AYD2
description Retropepsin-like protein OS=Phaseolus vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000628_010 0.0 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
2 Hb_008643_050 0.0052962593 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
3 Hb_001390_080 0.0067411698 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_000627_010 0.0997191818 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_000608_330 0.1056395486 - - Zeamatin precursor, putative [Ricinus communis]
6 Hb_000115_040 0.1143634902 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003228_090 0.1613398742 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
8 Hb_153636_010 0.2202228917 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
9 Hb_012090_020 0.2620426395 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
10 Hb_005379_010 0.2711415934 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000646_030 0.2711421924 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_025662_020 0.2711422617 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_003797_030 0.2711425871 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_074822_010 0.2711465513 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
15 Hb_121954_010 0.2711470114 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
16 Hb_003279_010 0.2711487815 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_000300_460 0.2711890898 - - Mavicyanin, putative [Ricinus communis]
18 Hb_000143_070 0.2713863028 - - -
19 Hb_014929_010 0.2718386624 - - -
20 Hb_004951_050 0.2721224535 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000628_010 Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_000628_010--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_000628_010--Hb_001390_080 Hb_000627_010 Hb_000627_010 Hb_000628_010--Hb_000627_010 Hb_000608_330 Hb_000608_330 Hb_000628_010--Hb_000608_330 Hb_000115_040 Hb_000115_040 Hb_000628_010--Hb_000115_040 Hb_003228_090 Hb_003228_090 Hb_000628_010--Hb_003228_090 Hb_008643_050--Hb_001390_080 Hb_008643_050--Hb_000627_010 Hb_008643_050--Hb_000608_330 Hb_008643_050--Hb_000115_040 Hb_008643_050--Hb_003228_090 Hb_001390_080--Hb_000608_330 Hb_001390_080--Hb_000627_010 Hb_001390_080--Hb_000115_040 Hb_001390_080--Hb_003228_090 Hb_000627_010--Hb_000115_040 Hb_000627_010--Hb_000608_330 Hb_003693_060 Hb_003693_060 Hb_000627_010--Hb_003693_060 Hb_000608_330--Hb_003228_090 Hb_000608_330--Hb_000115_040 Hb_184798_050 Hb_184798_050 Hb_000115_040--Hb_184798_050 Hb_153636_010 Hb_153636_010 Hb_003228_090--Hb_153636_010 Hb_003228_090--Hb_000627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00638127 0 0.00497266 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0242962

CAGE analysis