Hb_001390_080

Information

Type -
Description -
Location Contig1390: 76643-80196
Sequence    

Annotation

kegg
ID rcu:RCOM_0380590
description structural constituent of cell wall, putative
nr
ID XP_002533713.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T644
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_0380590 PE=4 SV=1
Gene Ontology
ID GO:0005576
description structural constituent of cell

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_080 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_000628_010 0.0067411698 - - PREDICTED: uncharacterized protein LOC105795966 [Gossypium raimondii]
3 Hb_008643_050 0.0095253101 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_000608_330 0.1006019489 - - Zeamatin precursor, putative [Ricinus communis]
5 Hb_000627_010 0.1031402121 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_000115_040 0.1169326476 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003228_090 0.1548135263 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
8 Hb_153636_010 0.2168767509 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
9 Hb_012090_020 0.2614070073 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
10 Hb_134546_010 0.2702164973 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
11 Hb_000300_460 0.2754514334 - - Mavicyanin, putative [Ricinus communis]
12 Hb_003279_010 0.2754625546 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_121954_010 0.2754650704 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
14 Hb_074822_010 0.2754658347 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
15 Hb_005379_010 0.2754888139 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000646_030 0.2754977667 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_025662_020 0.2754983565 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_003797_030 0.2755008269 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000143_070 0.2755397689 - - -
20 Hb_014929_010 0.2758548155 - - -

Gene co-expression network

sample Hb_001390_080 Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_001390_080--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_001390_080--Hb_008643_050 Hb_000608_330 Hb_000608_330 Hb_001390_080--Hb_000608_330 Hb_000627_010 Hb_000627_010 Hb_001390_080--Hb_000627_010 Hb_000115_040 Hb_000115_040 Hb_001390_080--Hb_000115_040 Hb_003228_090 Hb_003228_090 Hb_001390_080--Hb_003228_090 Hb_000628_010--Hb_008643_050 Hb_000628_010--Hb_000627_010 Hb_000628_010--Hb_000608_330 Hb_000628_010--Hb_000115_040 Hb_000628_010--Hb_003228_090 Hb_008643_050--Hb_000627_010 Hb_008643_050--Hb_000608_330 Hb_008643_050--Hb_000115_040 Hb_008643_050--Hb_003228_090 Hb_000608_330--Hb_003228_090 Hb_000608_330--Hb_000115_040 Hb_000608_330--Hb_000627_010 Hb_000627_010--Hb_000115_040 Hb_003693_060 Hb_003693_060 Hb_000627_010--Hb_003693_060 Hb_184798_050 Hb_184798_050 Hb_000115_040--Hb_184798_050 Hb_153636_010 Hb_153636_010 Hb_003228_090--Hb_153636_010 Hb_003228_090--Hb_000627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194296 0 0.0153442 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0719963

CAGE analysis