Hb_012184_030

Information

Type -
Description -
Location Contig12184: 22431-23751
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012184_030 0.0 - - -
2 Hb_004241_030 0.2382051038 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000752_080 0.2391813813 - - -
4 Hb_000085_030 0.2553531817 - - -
5 Hb_017604_030 0.2597566265 - - -
6 Hb_007040_010 0.2647073074 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
7 Hb_004687_010 0.2694996845 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_023675_030 0.2703543844 - - -
9 Hb_105581_010 0.27664177 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_000089_050 0.2766745215 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002249_210 0.2850345404 - - -
12 Hb_000140_430 0.2959084987 - - -
13 Hb_000463_030 0.2991030996 - - -
14 Hb_004010_020 0.2995630311 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_015076_020 0.3019510143 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
16 Hb_004520_030 0.3083964274 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_001488_260 0.3104429756 - - Alpha-2-macroglobulin [Gossypium arboreum]
18 Hb_001417_020 0.3119981456 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
19 Hb_007810_070 0.3125510348 - - hypothetical protein VITISV_027174 [Vitis vinifera]
20 Hb_002637_020 0.3153622088 - - -

Gene co-expression network

sample Hb_012184_030 Hb_012184_030 Hb_004241_030 Hb_004241_030 Hb_012184_030--Hb_004241_030 Hb_000752_080 Hb_000752_080 Hb_012184_030--Hb_000752_080 Hb_000085_030 Hb_000085_030 Hb_012184_030--Hb_000085_030 Hb_017604_030 Hb_017604_030 Hb_012184_030--Hb_017604_030 Hb_007040_010 Hb_007040_010 Hb_012184_030--Hb_007040_010 Hb_004687_010 Hb_004687_010 Hb_012184_030--Hb_004687_010 Hb_000574_140 Hb_000574_140 Hb_004241_030--Hb_000574_140 Hb_015076_020 Hb_015076_020 Hb_004241_030--Hb_015076_020 Hb_000505_120 Hb_000505_120 Hb_004241_030--Hb_000505_120 Hb_004241_030--Hb_004687_010 Hb_011280_020 Hb_011280_020 Hb_004241_030--Hb_011280_020 Hb_008783_010 Hb_008783_010 Hb_004241_030--Hb_008783_010 Hb_000752_080--Hb_007040_010 Hb_000752_080--Hb_017604_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_004010_020 Hb_004010_020 Hb_000752_080--Hb_004010_020 Hb_008758_010 Hb_008758_010 Hb_000752_080--Hb_008758_010 Hb_000140_430 Hb_000140_430 Hb_000085_030--Hb_000140_430 Hb_002637_020 Hb_002637_020 Hb_000085_030--Hb_002637_020 Hb_002520_010 Hb_002520_010 Hb_000085_030--Hb_002520_010 Hb_000671_140 Hb_000671_140 Hb_000085_030--Hb_000671_140 Hb_001160_010 Hb_001160_010 Hb_000085_030--Hb_001160_010 Hb_031866_030 Hb_031866_030 Hb_017604_030--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_017604_030--Hb_002060_040 Hb_009152_030 Hb_009152_030 Hb_017604_030--Hb_009152_030 Hb_033066_030 Hb_033066_030 Hb_017604_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_017604_030--Hb_000009_010 Hb_007040_010--Hb_008758_010 Hb_007040_010--Hb_004010_020 Hb_000059_120 Hb_000059_120 Hb_007040_010--Hb_000059_120 Hb_008206_070 Hb_008206_070 Hb_007040_010--Hb_008206_070 Hb_004687_010--Hb_000574_140 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.566864 0.103096 0 0 0.216264 0.048901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.083057 1.13137

CAGE analysis