Hb_011280_020

Information

Type -
Description -
Location Contig11280: 18002-20001
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011280_020 0.0 - - polyprotein [Oryza australiensis]
2 Hb_000505_120 0.0709279503 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_008783_010 0.1591431908 - - -
4 Hb_015076_020 0.1942311773 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
5 Hb_003413_010 0.2097877233 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_083663_010 0.2223941873 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_004241_030 0.2301108104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000574_140 0.2330994047 - - -
9 Hb_000136_080 0.2410889427 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
10 Hb_151411_010 0.2587851575 - - -
11 Hb_000192_060 0.2601684335 - - -
12 Hb_000209_010 0.2613151243 - - -
13 Hb_001301_070 0.2637325888 - - -
14 Hb_002056_140 0.2653070906 - - -
15 Hb_015778_020 0.2659215159 - - Putative methyltransferase family protein [Solanum demissum]
16 Hb_000916_010 0.2667659132 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_039547_010 0.2669188791 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
18 Hb_005852_010 0.2698195746 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_070905_010 0.2713900611 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
20 Hb_097006_010 0.2736884262 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]

Gene co-expression network

sample Hb_011280_020 Hb_011280_020 Hb_000505_120 Hb_000505_120 Hb_011280_020--Hb_000505_120 Hb_008783_010 Hb_008783_010 Hb_011280_020--Hb_008783_010 Hb_015076_020 Hb_015076_020 Hb_011280_020--Hb_015076_020 Hb_003413_010 Hb_003413_010 Hb_011280_020--Hb_003413_010 Hb_083663_010 Hb_083663_010 Hb_011280_020--Hb_083663_010 Hb_004241_030 Hb_004241_030 Hb_011280_020--Hb_004241_030 Hb_000505_120--Hb_008783_010 Hb_000505_120--Hb_015076_020 Hb_000505_120--Hb_003413_010 Hb_000505_120--Hb_004241_030 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_008783_010--Hb_015076_020 Hb_008783_010--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_008783_010--Hb_010164_040 Hb_008783_010--Hb_004241_030 Hb_010452_010 Hb_010452_010 Hb_015076_020--Hb_010452_010 Hb_015778_020 Hb_015778_020 Hb_015076_020--Hb_015778_020 Hb_015076_020--Hb_004241_030 Hb_000136_080 Hb_000136_080 Hb_003413_010--Hb_000136_080 Hb_000975_260 Hb_000975_260 Hb_003413_010--Hb_000975_260 Hb_070905_010 Hb_070905_010 Hb_003413_010--Hb_070905_010 Hb_001174_050 Hb_001174_050 Hb_003413_010--Hb_001174_050 Hb_083663_010--Hb_015778_020 Hb_011344_150 Hb_011344_150 Hb_083663_010--Hb_011344_150 Hb_083663_010--Hb_010452_010 Hb_002520_010 Hb_002520_010 Hb_083663_010--Hb_002520_010 Hb_083663_010--Hb_000505_120 Hb_000574_140 Hb_000574_140 Hb_004241_030--Hb_000574_140 Hb_004687_010 Hb_004687_010 Hb_004241_030--Hb_004687_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111399 0.0276106 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00793936 0.041993

CAGE analysis