Hb_070905_010

Information

Type -
Description -
Location Contig70905: 121-849
Sequence    

Annotation

kegg
ID bvg:104908276
description uncharacterized LOC104908276
nr
ID XP_010521027.1
description PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID Q0ZCD3
description Integrase OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070905_010 0.0 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
2 Hb_000228_230 0.0998423592 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000975_260 0.1228152788 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000383_020 0.2171280581 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_003413_010 0.2234175157 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_003649_030 0.2298230501 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
7 Hb_005306_020 0.2362060802 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
8 Hb_000866_390 0.2427315355 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
9 Hb_004713_050 0.2450730467 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
10 Hb_000061_110 0.2459379376 - - -
11 Hb_005016_120 0.2469753733 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
12 Hb_129046_010 0.2574716336 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
13 Hb_001411_100 0.2605968395 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
14 Hb_005470_040 0.2647790672 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
15 Hb_001008_020 0.2652493045 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000600_080 0.2667571578 - - -
17 Hb_056506_010 0.2678750741 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_000685_140 0.2697092056 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
19 Hb_011280_020 0.2713900611 - - polyprotein [Oryza australiensis]
20 Hb_083242_020 0.2726483066 - - hypothetical protein JCGZ_20097 [Jatropha curcas]

Gene co-expression network

sample Hb_070905_010 Hb_070905_010 Hb_000228_230 Hb_000228_230 Hb_070905_010--Hb_000228_230 Hb_000975_260 Hb_000975_260 Hb_070905_010--Hb_000975_260 Hb_000383_020 Hb_000383_020 Hb_070905_010--Hb_000383_020 Hb_003413_010 Hb_003413_010 Hb_070905_010--Hb_003413_010 Hb_003649_030 Hb_003649_030 Hb_070905_010--Hb_003649_030 Hb_005306_020 Hb_005306_020 Hb_070905_010--Hb_005306_020 Hb_000228_230--Hb_000975_260 Hb_000228_230--Hb_000383_020 Hb_004713_050 Hb_004713_050 Hb_000228_230--Hb_004713_050 Hb_001611_010 Hb_001611_010 Hb_000228_230--Hb_001611_010 Hb_054865_030 Hb_054865_030 Hb_000228_230--Hb_054865_030 Hb_001355_060 Hb_001355_060 Hb_000975_260--Hb_001355_060 Hb_000975_260--Hb_003413_010 Hb_000061_110 Hb_000061_110 Hb_000975_260--Hb_000061_110 Hb_000975_260--Hb_003649_030 Hb_007320_020 Hb_007320_020 Hb_000383_020--Hb_007320_020 Hb_001971_020 Hb_001971_020 Hb_000383_020--Hb_001971_020 Hb_002003_040 Hb_002003_040 Hb_000383_020--Hb_002003_040 Hb_043939_010 Hb_043939_010 Hb_000383_020--Hb_043939_010 Hb_000264_340 Hb_000264_340 Hb_000383_020--Hb_000264_340 Hb_005016_120 Hb_005016_120 Hb_000383_020--Hb_005016_120 Hb_000136_080 Hb_000136_080 Hb_003413_010--Hb_000136_080 Hb_000505_120 Hb_000505_120 Hb_003413_010--Hb_000505_120 Hb_011280_020 Hb_011280_020 Hb_003413_010--Hb_011280_020 Hb_001174_050 Hb_001174_050 Hb_003413_010--Hb_001174_050 Hb_003649_030--Hb_000061_110 Hb_056506_010 Hb_056506_010 Hb_003649_030--Hb_056506_010 Hb_000866_390 Hb_000866_390 Hb_003649_030--Hb_000866_390 Hb_009898_060 Hb_009898_060 Hb_003649_030--Hb_009898_060 Hb_001008_020 Hb_001008_020 Hb_003649_030--Hb_001008_020 Hb_001411_100 Hb_001411_100 Hb_003649_030--Hb_001411_100 Hb_008111_010 Hb_008111_010 Hb_005306_020--Hb_008111_010 Hb_005306_020--Hb_001971_020 Hb_001357_360 Hb_001357_360 Hb_005306_020--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_005306_020--Hb_028872_100 Hb_005306_020--Hb_000264_340 Hb_000767_010 Hb_000767_010 Hb_005306_020--Hb_000767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0348985 0.106273 0 0.0344234 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.077318 0.125338

CAGE analysis