Hb_000228_230

Information

Type -
Description -
Location Contig228: 239440-242801
Sequence    

Annotation

kegg
ID rcu:RCOM_0618990
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002528851.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SS82
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0618990 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000228_230 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_070905_010 0.0998423592 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_000975_260 0.1749666101 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000383_020 0.1777387856 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_004713_050 0.1902150376 - - RecName: Full=Beta-amyrin synthase [Betula platyphylla]
6 Hb_001611_010 0.203519093 - - scab resistance family protein [Populus trichocarpa]
7 Hb_054865_030 0.2167883701 - - -
8 Hb_002997_050 0.2179240465 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
9 Hb_064482_010 0.2208643496 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000866_390 0.2235521006 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
11 Hb_005306_020 0.2286104374 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_005016_120 0.2323030957 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
13 Hb_000603_120 0.2373895261 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_003649_030 0.239164789 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
15 Hb_003212_010 0.2405627015 - - sucrose transporter 4 [Hevea brasiliensis]
16 Hb_000059_080 0.242398674 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
17 Hb_071160_010 0.2471906351 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_000264_340 0.2478289161 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
19 Hb_022108_010 0.2494871896 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
20 Hb_001971_020 0.2494894809 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]

Gene co-expression network

sample Hb_000228_230 Hb_000228_230 Hb_070905_010 Hb_070905_010 Hb_000228_230--Hb_070905_010 Hb_000975_260 Hb_000975_260 Hb_000228_230--Hb_000975_260 Hb_000383_020 Hb_000383_020 Hb_000228_230--Hb_000383_020 Hb_004713_050 Hb_004713_050 Hb_000228_230--Hb_004713_050 Hb_001611_010 Hb_001611_010 Hb_000228_230--Hb_001611_010 Hb_054865_030 Hb_054865_030 Hb_000228_230--Hb_054865_030 Hb_070905_010--Hb_000975_260 Hb_070905_010--Hb_000383_020 Hb_003413_010 Hb_003413_010 Hb_070905_010--Hb_003413_010 Hb_003649_030 Hb_003649_030 Hb_070905_010--Hb_003649_030 Hb_005306_020 Hb_005306_020 Hb_070905_010--Hb_005306_020 Hb_001355_060 Hb_001355_060 Hb_000975_260--Hb_001355_060 Hb_000975_260--Hb_003413_010 Hb_000061_110 Hb_000061_110 Hb_000975_260--Hb_000061_110 Hb_000975_260--Hb_003649_030 Hb_007320_020 Hb_007320_020 Hb_000383_020--Hb_007320_020 Hb_001971_020 Hb_001971_020 Hb_000383_020--Hb_001971_020 Hb_002003_040 Hb_002003_040 Hb_000383_020--Hb_002003_040 Hb_043939_010 Hb_043939_010 Hb_000383_020--Hb_043939_010 Hb_000264_340 Hb_000264_340 Hb_000383_020--Hb_000264_340 Hb_005016_120 Hb_005016_120 Hb_000383_020--Hb_005016_120 Hb_002997_050 Hb_002997_050 Hb_004713_050--Hb_002997_050 Hb_064482_010 Hb_064482_010 Hb_004713_050--Hb_064482_010 Hb_000866_390 Hb_000866_390 Hb_004713_050--Hb_000866_390 Hb_000059_080 Hb_000059_080 Hb_004713_050--Hb_000059_080 Hb_022108_010 Hb_022108_010 Hb_004713_050--Hb_022108_010 Hb_004713_050--Hb_007320_020 Hb_000740_130 Hb_000740_130 Hb_001611_010--Hb_000740_130 Hb_000876_050 Hb_000876_050 Hb_001611_010--Hb_000876_050 Hb_010813_030 Hb_010813_030 Hb_001611_010--Hb_010813_030 Hb_006326_030 Hb_006326_030 Hb_001611_010--Hb_006326_030 Hb_001611_010--Hb_054865_030 Hb_018212_020 Hb_018212_020 Hb_001611_010--Hb_018212_020 Hb_132515_010 Hb_132515_010 Hb_054865_030--Hb_132515_010 Hb_006120_030 Hb_006120_030 Hb_054865_030--Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_054865_030--Hb_000917_120 Hb_054865_030--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_054865_030--Hb_003060_080 Hb_054865_030--Hb_064482_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00621614 0.0266073 0 0.00925395 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0263902 0.0236757

CAGE analysis