Hb_000975_260

Information

Type -
Description -
Location Contig975: 229081-235856
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64024: 234912-235373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_070905_010 0.1228152788 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_001355_060 0.1717638395 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_003413_010 0.1726283438 - - hypothetical protein, partial [Pseudomonas fluorescens]
5 Hb_000228_230 0.1749666101 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000061_110 0.1803400736 - - -
7 Hb_003649_030 0.18179299 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_129046_010 0.1840890445 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
9 Hb_001411_100 0.1959437808 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
10 Hb_000685_140 0.1987456006 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
11 Hb_001452_090 0.2082104582 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
12 Hb_000600_080 0.2084468043 - - -
13 Hb_131320_010 0.2101691044 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
14 Hb_028872_100 0.2161426421 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
15 Hb_005306_020 0.2169118119 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
16 Hb_000136_080 0.2194300936 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
17 Hb_158534_010 0.2195350857 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_072173_010 0.2214071476 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
19 Hb_002973_130 0.2244566736 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
20 Hb_000866_390 0.224841921 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000975_260 Hb_000975_260 Hb_070905_010 Hb_070905_010 Hb_000975_260--Hb_070905_010 Hb_001355_060 Hb_001355_060 Hb_000975_260--Hb_001355_060 Hb_003413_010 Hb_003413_010 Hb_000975_260--Hb_003413_010 Hb_000228_230 Hb_000228_230 Hb_000975_260--Hb_000228_230 Hb_000061_110 Hb_000061_110 Hb_000975_260--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_000975_260--Hb_003649_030 Hb_070905_010--Hb_000228_230 Hb_000383_020 Hb_000383_020 Hb_070905_010--Hb_000383_020 Hb_070905_010--Hb_003413_010 Hb_070905_010--Hb_003649_030 Hb_005306_020 Hb_005306_020 Hb_070905_010--Hb_005306_020 Hb_001174_050 Hb_001174_050 Hb_001355_060--Hb_001174_050 Hb_002973_130 Hb_002973_130 Hb_001355_060--Hb_002973_130 Hb_001355_060--Hb_000061_110 Hb_011358_010 Hb_011358_010 Hb_001355_060--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_001355_060--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_001355_060--Hb_145080_010 Hb_000136_080 Hb_000136_080 Hb_003413_010--Hb_000136_080 Hb_000505_120 Hb_000505_120 Hb_003413_010--Hb_000505_120 Hb_011280_020 Hb_011280_020 Hb_003413_010--Hb_011280_020 Hb_003413_010--Hb_001174_050 Hb_000228_230--Hb_000383_020 Hb_004713_050 Hb_004713_050 Hb_000228_230--Hb_004713_050 Hb_001611_010 Hb_001611_010 Hb_000228_230--Hb_001611_010 Hb_054865_030 Hb_054865_030 Hb_000228_230--Hb_054865_030 Hb_000061_110--Hb_003649_030 Hb_009898_060 Hb_009898_060 Hb_000061_110--Hb_009898_060 Hb_002815_040 Hb_002815_040 Hb_000061_110--Hb_002815_040 Hb_001411_100 Hb_001411_100 Hb_000061_110--Hb_001411_100 Hb_056506_010 Hb_056506_010 Hb_000061_110--Hb_056506_010 Hb_003649_030--Hb_056506_010 Hb_000866_390 Hb_000866_390 Hb_003649_030--Hb_000866_390 Hb_003649_030--Hb_009898_060 Hb_001008_020 Hb_001008_020 Hb_003649_030--Hb_001008_020 Hb_003649_030--Hb_001411_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0458127 0.249674 0 0.091421 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.206432 0.48314

CAGE analysis