Hb_001611_010

Information

Type -
Description -
Location Contig1611: 9546-12585
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11730g
description POPTRDRAFT_566442; scab resistance family protein
nr
ID XP_002315858.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9HW18
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11730g PE=4 SV=2
Gene Ontology
ID GO:0005515
description scab resistance family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001611_010 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_000740_130 0.127147728 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_000876_050 0.1283312217 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
4 Hb_010813_030 0.1383321915 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
5 Hb_006326_030 0.1486690704 - - conserved hypothetical protein [Ricinus communis]
6 Hb_054865_030 0.1503363916 - - -
7 Hb_018212_020 0.1507821128 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
8 Hb_132515_010 0.1564136467 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_029508_030 0.1577957478 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
10 Hb_000684_010 0.1582573243 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_007709_010 0.1628751955 - - -
12 Hb_000920_360 0.164605459 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
13 Hb_064482_010 0.1665402683 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001675_130 0.166623947 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
15 Hb_000221_170 0.1738255809 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
16 Hb_000254_150 0.1745196208 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
17 Hb_000120_980 0.1755796372 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
18 Hb_000086_370 0.1783623821 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
19 Hb_008692_010 0.179550858 - - putative polyol transported protein 2 [Hevea brasiliensis]
20 Hb_000286_190 0.1798969857 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]

Gene co-expression network

sample Hb_001611_010 Hb_001611_010 Hb_000740_130 Hb_000740_130 Hb_001611_010--Hb_000740_130 Hb_000876_050 Hb_000876_050 Hb_001611_010--Hb_000876_050 Hb_010813_030 Hb_010813_030 Hb_001611_010--Hb_010813_030 Hb_006326_030 Hb_006326_030 Hb_001611_010--Hb_006326_030 Hb_054865_030 Hb_054865_030 Hb_001611_010--Hb_054865_030 Hb_018212_020 Hb_018212_020 Hb_001611_010--Hb_018212_020 Hb_182021_010 Hb_182021_010 Hb_000740_130--Hb_182021_010 Hb_000844_100 Hb_000844_100 Hb_000740_130--Hb_000844_100 Hb_088916_010 Hb_088916_010 Hb_000740_130--Hb_088916_010 Hb_132515_010 Hb_132515_010 Hb_000740_130--Hb_132515_010 Hb_000740_130--Hb_054865_030 Hb_008692_010 Hb_008692_010 Hb_000740_130--Hb_008692_010 Hb_000221_170 Hb_000221_170 Hb_000876_050--Hb_000221_170 Hb_000684_010 Hb_000684_010 Hb_000876_050--Hb_000684_010 Hb_005333_100 Hb_005333_100 Hb_000876_050--Hb_005333_100 Hb_000120_980 Hb_000120_980 Hb_000876_050--Hb_000120_980 Hb_005542_110 Hb_005542_110 Hb_000876_050--Hb_005542_110 Hb_000876_050--Hb_010813_030 Hb_010813_030--Hb_018212_020 Hb_000254_150 Hb_000254_150 Hb_010813_030--Hb_000254_150 Hb_010813_030--Hb_006326_030 Hb_010813_030--Hb_132515_010 Hb_001675_130 Hb_001675_130 Hb_010813_030--Hb_001675_130 Hb_006326_030--Hb_018212_020 Hb_006326_030--Hb_132515_010 Hb_000286_190 Hb_000286_190 Hb_006326_030--Hb_000286_190 Hb_000920_360 Hb_000920_360 Hb_006326_030--Hb_000920_360 Hb_006326_030--Hb_000876_050 Hb_054865_030--Hb_132515_010 Hb_006120_030 Hb_006120_030 Hb_054865_030--Hb_006120_030 Hb_000917_120 Hb_000917_120 Hb_054865_030--Hb_000917_120 Hb_003060_080 Hb_003060_080 Hb_054865_030--Hb_003060_080 Hb_064482_010 Hb_064482_010 Hb_054865_030--Hb_064482_010 Hb_018212_020--Hb_000254_150 Hb_018212_020--Hb_132515_010 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110 Hb_002997_050 Hb_002997_050 Hb_018212_020--Hb_002997_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0908216 1.15641 0.0370411 0.204701 0.00704644 0.0131378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.66066 0.588838

CAGE analysis