Hb_000505_120

Information

Type -
Description -
Location Contig505: 133129-140187
Sequence    

Annotation

kegg
ID cam:101513979
description uncharacterized LOC101513979
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQN0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035732 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrovirus-related pol polyprotein from transposon 297

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_120 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_011280_020 0.0709279503 - - polyprotein [Oryza australiensis]
3 Hb_008783_010 0.1042571253 - - -
4 Hb_015076_020 0.1382773355 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
5 Hb_003413_010 0.1957851104 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_004241_030 0.2086478327 - - conserved hypothetical protein [Ricinus communis]
7 Hb_097006_010 0.2227592339 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
8 Hb_000136_080 0.2287671839 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
9 Hb_015778_020 0.2507135673 - - Putative methyltransferase family protein [Solanum demissum]
10 Hb_000574_140 0.2609143307 - - -
11 Hb_083663_010 0.2609656485 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_010452_010 0.2632112662 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
13 Hb_010164_040 0.2649425937 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000975_260 0.2724678555 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000916_010 0.2735402366 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
16 Hb_039547_010 0.2735536951 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
17 Hb_000209_010 0.2744385003 - - -
18 Hb_000089_050 0.2754448819 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_151411_010 0.2761996039 - - -
20 Hb_000192_060 0.2772681645 - - -

Gene co-expression network

sample Hb_000505_120 Hb_000505_120 Hb_011280_020 Hb_011280_020 Hb_000505_120--Hb_011280_020 Hb_008783_010 Hb_008783_010 Hb_000505_120--Hb_008783_010 Hb_015076_020 Hb_015076_020 Hb_000505_120--Hb_015076_020 Hb_003413_010 Hb_003413_010 Hb_000505_120--Hb_003413_010 Hb_004241_030 Hb_004241_030 Hb_000505_120--Hb_004241_030 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_011280_020--Hb_008783_010 Hb_011280_020--Hb_015076_020 Hb_011280_020--Hb_003413_010 Hb_083663_010 Hb_083663_010 Hb_011280_020--Hb_083663_010 Hb_011280_020--Hb_004241_030 Hb_008783_010--Hb_015076_020 Hb_008783_010--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_008783_010--Hb_010164_040 Hb_008783_010--Hb_004241_030 Hb_010452_010 Hb_010452_010 Hb_015076_020--Hb_010452_010 Hb_015778_020 Hb_015778_020 Hb_015076_020--Hb_015778_020 Hb_015076_020--Hb_004241_030 Hb_000136_080 Hb_000136_080 Hb_003413_010--Hb_000136_080 Hb_000975_260 Hb_000975_260 Hb_003413_010--Hb_000975_260 Hb_070905_010 Hb_070905_010 Hb_003413_010--Hb_070905_010 Hb_001174_050 Hb_001174_050 Hb_003413_010--Hb_001174_050 Hb_000574_140 Hb_000574_140 Hb_004241_030--Hb_000574_140 Hb_004687_010 Hb_004687_010 Hb_004241_030--Hb_004687_010 Hb_097006_010--Hb_010164_040 Hb_128193_010 Hb_128193_010 Hb_097006_010--Hb_128193_010 Hb_001241_050 Hb_001241_050 Hb_097006_010--Hb_001241_050 Hb_001629_040 Hb_001629_040 Hb_097006_010--Hb_001629_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270413 0.0452564 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0197337 0.0986603

CAGE analysis