Hb_097006_010

Information

Type -
Description -
Location Contig97006: 10-1011
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012070176.1
description PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097006_010 0.0 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
2 Hb_010164_040 0.0473437868 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_008783_010 0.1802899293 - - -
4 Hb_000505_120 0.2227592339 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_128193_010 0.2402000855 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
6 Hb_001241_050 0.240420246 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
7 Hb_001629_040 0.2425584184 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
8 Hb_129046_010 0.2479597342 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
9 Hb_000009_010 0.2505740973 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
10 Hb_015076_020 0.2608133567 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
11 Hb_020400_010 0.2613767232 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
12 Hb_110782_010 0.2657271133 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
13 Hb_001871_030 0.2665405657 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014967_010 0.2692421849 - - -
15 Hb_000832_010 0.269855246 - - hypothetical protein VITISV_005044 [Vitis vinifera]
16 Hb_003413_010 0.2712403513 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_000089_050 0.2723777877 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_159404_010 0.2732738716 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_011280_020 0.2736884262 - - polyprotein [Oryza australiensis]
20 Hb_002729_020 0.2764041562 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]

Gene co-expression network

sample Hb_097006_010 Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_097006_010--Hb_010164_040 Hb_008783_010 Hb_008783_010 Hb_097006_010--Hb_008783_010 Hb_000505_120 Hb_000505_120 Hb_097006_010--Hb_000505_120 Hb_128193_010 Hb_128193_010 Hb_097006_010--Hb_128193_010 Hb_001241_050 Hb_001241_050 Hb_097006_010--Hb_001241_050 Hb_001629_040 Hb_001629_040 Hb_097006_010--Hb_001629_040 Hb_010164_040--Hb_008783_010 Hb_010164_040--Hb_128193_010 Hb_010164_040--Hb_001241_050 Hb_129046_010 Hb_129046_010 Hb_010164_040--Hb_129046_010 Hb_010164_040--Hb_001629_040 Hb_008783_010--Hb_000505_120 Hb_015076_020 Hb_015076_020 Hb_008783_010--Hb_015076_020 Hb_011280_020 Hb_011280_020 Hb_008783_010--Hb_011280_020 Hb_004241_030 Hb_004241_030 Hb_008783_010--Hb_004241_030 Hb_000505_120--Hb_011280_020 Hb_000505_120--Hb_015076_020 Hb_003413_010 Hb_003413_010 Hb_000505_120--Hb_003413_010 Hb_000505_120--Hb_004241_030 Hb_128193_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_128193_010--Hb_000009_010 Hb_009557_010 Hb_009557_010 Hb_128193_010--Hb_009557_010 Hb_023142_010 Hb_023142_010 Hb_128193_010--Hb_023142_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_004687_010 Hb_004687_010 Hb_001241_050--Hb_004687_010 Hb_000612_050 Hb_000612_050 Hb_001241_050--Hb_000612_050 Hb_000574_140 Hb_000574_140 Hb_001241_050--Hb_000574_140 Hb_006103_040 Hb_006103_040 Hb_001241_050--Hb_006103_040 Hb_001629_040--Hb_000009_010 Hb_001629_040--Hb_031866_030 Hb_001629_040--Hb_009152_030 Hb_002060_040 Hb_002060_040 Hb_001629_040--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_001629_040--Hb_033066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220719 0.0183959 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0479628 0.0813461

CAGE analysis