Hb_001241_050

Information

Type -
Description -
Location Contig1241: 81158-82287
Sequence    

Annotation

kegg
ID vvi:104880586
description uncharacterized LOC104880586
nr
ID XP_010655898.1
description PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AX25
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036173 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104880586 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001241_050 0.0 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
2 Hb_004687_010 0.2351854372 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_097006_010 0.240420246 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
4 Hb_010164_040 0.240755137 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000612_050 0.2673079379 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
6 Hb_000574_140 0.2733614057 - - -
7 Hb_006103_040 0.2781249341 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_004241_030 0.2883935042 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000346_080 0.2902658043 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
10 Hb_008783_010 0.2948778359 - - -
11 Hb_001871_030 0.2958239238 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000505_120 0.3095044006 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_105581_010 0.3111567699 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_002154_080 0.3129791953 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
15 Hb_001711_040 0.3167965554 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000832_010 0.3184520246 - - hypothetical protein VITISV_005044 [Vitis vinifera]
17 Hb_006013_030 0.3213206318 - - -
18 Hb_093824_010 0.3261565661 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
19 Hb_002733_050 0.3261785044 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_070905_010 0.3288110047 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]

Gene co-expression network

sample Hb_001241_050 Hb_001241_050 Hb_004687_010 Hb_004687_010 Hb_001241_050--Hb_004687_010 Hb_097006_010 Hb_097006_010 Hb_001241_050--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_001241_050--Hb_010164_040 Hb_000612_050 Hb_000612_050 Hb_001241_050--Hb_000612_050 Hb_000574_140 Hb_000574_140 Hb_001241_050--Hb_000574_140 Hb_006103_040 Hb_006103_040 Hb_001241_050--Hb_006103_040 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_004687_010--Hb_006103_040 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_097006_010--Hb_010164_040 Hb_097006_010--Hb_008783_010 Hb_000505_120 Hb_000505_120 Hb_097006_010--Hb_000505_120 Hb_128193_010 Hb_128193_010 Hb_097006_010--Hb_128193_010 Hb_001629_040 Hb_001629_040 Hb_097006_010--Hb_001629_040 Hb_010164_040--Hb_008783_010 Hb_010164_040--Hb_128193_010 Hb_129046_010 Hb_129046_010 Hb_010164_040--Hb_129046_010 Hb_010164_040--Hb_001629_040 Hb_000346_080 Hb_000346_080 Hb_000612_050--Hb_000346_080 Hb_139605_010 Hb_139605_010 Hb_000612_050--Hb_139605_010 Hb_000574_290 Hb_000574_290 Hb_000612_050--Hb_000574_290 Hb_066206_010 Hb_066206_010 Hb_000612_050--Hb_066206_010 Hb_000803_230 Hb_000803_230 Hb_000612_050--Hb_000803_230 Hb_000043_040 Hb_000043_040 Hb_000612_050--Hb_000043_040 Hb_000574_140--Hb_004241_030 Hb_011280_020 Hb_011280_020 Hb_000574_140--Hb_011280_020 Hb_000574_140--Hb_000505_120 Hb_000574_140--Hb_006103_040 Hb_001310_100 Hb_001310_100 Hb_006103_040--Hb_001310_100 Hb_133047_030 Hb_133047_030 Hb_006103_040--Hb_133047_030 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_132317_010 Hb_132317_010 Hb_006103_040--Hb_132317_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0237602 0.03966 0 0 0.0222745 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0690164 0.0872679

CAGE analysis