Hb_132317_010

Information

Type -
Description -
Location Contig132317: 59-514
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132317_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_133047_030 0.0938731888 - - nuclear acid binding protein, putative [Ricinus communis]
3 Hb_007193_050 0.1787623629 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000346_080 0.2281718448 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
5 Hb_024468_040 0.233491962 - - -
6 Hb_027380_250 0.234271322 - - Isoflavone reductase, putative [Ricinus communis]
7 Hb_012538_010 0.2728546628 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_006103_040 0.2756597626 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001021_050 0.2771596775 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_033286_020 0.2805502513 - - -
11 Hb_002888_080 0.2862759874 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
12 Hb_014548_030 0.2991187211 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
13 Hb_000612_050 0.2994840096 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
14 Hb_002835_060 0.301659163 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
15 Hb_000742_150 0.3047128989 - - -
16 Hb_000045_060 0.3079230497 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002815_040 0.3315405231 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
18 Hb_004687_010 0.3369995355 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_118014_010 0.3371864881 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
20 Hb_006274_020 0.3380861421 - - structural constituent of cell wall, putative [Ricinus communis]

Gene co-expression network

sample Hb_132317_010 Hb_132317_010 Hb_133047_030 Hb_133047_030 Hb_132317_010--Hb_133047_030 Hb_007193_050 Hb_007193_050 Hb_132317_010--Hb_007193_050 Hb_000346_080 Hb_000346_080 Hb_132317_010--Hb_000346_080 Hb_024468_040 Hb_024468_040 Hb_132317_010--Hb_024468_040 Hb_027380_250 Hb_027380_250 Hb_132317_010--Hb_027380_250 Hb_012538_010 Hb_012538_010 Hb_132317_010--Hb_012538_010 Hb_133047_030--Hb_000346_080 Hb_133047_030--Hb_012538_010 Hb_006103_040 Hb_006103_040 Hb_133047_030--Hb_006103_040 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080 Hb_007193_050--Hb_027380_250 Hb_118014_010 Hb_118014_010 Hb_007193_050--Hb_118014_010 Hb_000045_060 Hb_000045_060 Hb_007193_050--Hb_000045_060 Hb_007193_050--Hb_024468_040 Hb_007193_050--Hb_133047_030 Hb_002835_060 Hb_002835_060 Hb_000346_080--Hb_002835_060 Hb_000612_050 Hb_000612_050 Hb_000346_080--Hb_000612_050 Hb_000243_050 Hb_000243_050 Hb_000346_080--Hb_000243_050 Hb_003938_100 Hb_003938_100 Hb_000346_080--Hb_003938_100 Hb_042463_050 Hb_042463_050 Hb_024468_040--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_024468_040--Hb_027204_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_027380_250--Hb_118014_010 Hb_027380_250--Hb_000045_060 Hb_078901_020 Hb_078901_020 Hb_027380_250--Hb_078901_020 Hb_001021_050 Hb_001021_050 Hb_027380_250--Hb_001021_050 Hb_006274_020 Hb_006274_020 Hb_012538_010--Hb_006274_020 Hb_012538_010--Hb_001021_050 Hb_019641_020 Hb_019641_020 Hb_012538_010--Hb_019641_020 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_000280_120 Hb_000280_120 Hb_012538_010--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02808 0 0 0.462095 0.350616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.465504 1.35125

CAGE analysis