Hb_002888_080

Information

Type -
Description -
Location Contig2888: 93134-102038
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025968mg
description hypothetical protein
nr
ID XP_009630466.1
description PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M5X4P9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_080 0.0 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
2 Hb_157029_010 0.2176440066 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
3 Hb_108557_010 0.2203685846 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_004228_040 0.2226696923 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_100332_020 0.2324989616 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
6 Hb_000832_010 0.2337440714 - - hypothetical protein VITISV_005044 [Vitis vinifera]
7 Hb_001871_030 0.2344495485 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002090_010 0.2362363119 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
9 Hb_142522_040 0.2431194671 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_033286_020 0.2476086692 - - -
11 Hb_000454_150 0.2495965156 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
12 Hb_012305_090 0.2512809862 - - hypothetical protein VITISV_018166 [Vitis vinifera]
13 Hb_175841_010 0.2540171601 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
14 Hb_133047_030 0.2564710613 - - nuclear acid binding protein, putative [Ricinus communis]
15 Hb_007885_110 0.2613565531 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
16 Hb_010812_140 0.2638752581 - - protein binding protein, putative [Ricinus communis]
17 Hb_005765_020 0.2727191504 - - -
18 Hb_012538_010 0.2735539069 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_010490_060 0.2744676547 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
20 Hb_006992_030 0.276538425 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002888_080 Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_002888_080--Hb_157029_010 Hb_108557_010 Hb_108557_010 Hb_002888_080--Hb_108557_010 Hb_004228_040 Hb_004228_040 Hb_002888_080--Hb_004228_040 Hb_100332_020 Hb_100332_020 Hb_002888_080--Hb_100332_020 Hb_000832_010 Hb_000832_010 Hb_002888_080--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002888_080--Hb_001871_030 Hb_157029_010--Hb_004228_040 Hb_157029_010--Hb_108557_010 Hb_175841_010 Hb_175841_010 Hb_157029_010--Hb_175841_010 Hb_000130_070 Hb_000130_070 Hb_157029_010--Hb_000130_070 Hb_001652_040 Hb_001652_040 Hb_157029_010--Hb_001652_040 Hb_108557_010--Hb_004228_040 Hb_002090_010 Hb_002090_010 Hb_108557_010--Hb_002090_010 Hb_031474_020 Hb_031474_020 Hb_108557_010--Hb_031474_020 Hb_064106_010 Hb_064106_010 Hb_108557_010--Hb_064106_010 Hb_004228_040--Hb_001652_040 Hb_001225_060 Hb_001225_060 Hb_004228_040--Hb_001225_060 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020 Hb_000028_270 Hb_000028_270 Hb_100332_020--Hb_000028_270 Hb_005765_020 Hb_005765_020 Hb_100332_020--Hb_005765_020 Hb_058095_030 Hb_058095_030 Hb_100332_020--Hb_058095_030 Hb_006992_030 Hb_006992_030 Hb_100332_020--Hb_006992_030 Hb_090889_010 Hb_090889_010 Hb_100332_020--Hb_090889_010 Hb_001856_110 Hb_001856_110 Hb_100332_020--Hb_001856_110 Hb_000832_010--Hb_001871_030 Hb_006274_020 Hb_006274_020 Hb_000832_010--Hb_006274_020 Hb_002729_020 Hb_002729_020 Hb_000832_010--Hb_002729_020 Hb_000832_010--Hb_005765_020 Hb_019641_020 Hb_019641_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_003927_020 Hb_003927_020 Hb_001871_030--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_001871_030--Hb_000167_070 Hb_001871_030--Hb_006992_030 Hb_001871_030--Hb_005765_020 Hb_007885_110 Hb_007885_110 Hb_001871_030--Hb_007885_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0375493 0.0192308 0 0.0117872 0.022063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.062932 0.0946148

CAGE analysis