Hb_001652_040

Information

Type -
Description -
Location Contig1652: 56414-57163
Sequence    

Annotation

kegg
ID pmum:103341683
description uncharacterized LOC103341683
nr
ID XP_008243442.1
description PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15221: 53397-64547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_040 0.0 - - PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]
2 Hb_004228_040 0.2047605135 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_099496_010 0.2794486701 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
4 Hb_010810_110 0.280554215 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_002477_220 0.2873611126 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
6 Hb_108557_010 0.2908364922 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_157029_010 0.3030826271 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
8 Hb_000072_040 0.3137920912 - - -
9 Hb_000011_480 0.3189418574 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000735_170 0.3225324241 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
11 Hb_000243_110 0.3225921593 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
12 Hb_022250_120 0.3228610748 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
13 Hb_002780_060 0.3254224066 - - conserved hypothetical protein [Ricinus communis]
14 Hb_182680_010 0.3289680769 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_009848_010 0.3298724018 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
16 Hb_000130_070 0.33211767 - - hypothetical protein JCGZ_14738 [Jatropha curcas]
17 Hb_175841_010 0.3355796871 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
18 Hb_016834_010 0.3394338825 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
19 Hb_001225_060 0.3400643045 - - BnaC03g58850D [Brassica napus]
20 Hb_000505_100 0.3466651671 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]

Gene co-expression network

sample Hb_001652_040 Hb_001652_040 Hb_004228_040 Hb_004228_040 Hb_001652_040--Hb_004228_040 Hb_099496_010 Hb_099496_010 Hb_001652_040--Hb_099496_010 Hb_010810_110 Hb_010810_110 Hb_001652_040--Hb_010810_110 Hb_002477_220 Hb_002477_220 Hb_001652_040--Hb_002477_220 Hb_108557_010 Hb_108557_010 Hb_001652_040--Hb_108557_010 Hb_157029_010 Hb_157029_010 Hb_001652_040--Hb_157029_010 Hb_004228_040--Hb_108557_010 Hb_002888_080 Hb_002888_080 Hb_004228_040--Hb_002888_080 Hb_004228_040--Hb_157029_010 Hb_001225_060 Hb_001225_060 Hb_004228_040--Hb_001225_060 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020 Hb_002780_060 Hb_002780_060 Hb_099496_010--Hb_002780_060 Hb_170193_020 Hb_170193_020 Hb_099496_010--Hb_170193_020 Hb_098315_090 Hb_098315_090 Hb_099496_010--Hb_098315_090 Hb_011639_040 Hb_011639_040 Hb_099496_010--Hb_011639_040 Hb_000022_170 Hb_000022_170 Hb_099496_010--Hb_000022_170 Hb_044005_010 Hb_044005_010 Hb_099496_010--Hb_044005_010 Hb_004143_120 Hb_004143_120 Hb_010810_110--Hb_004143_120 Hb_010810_110--Hb_002780_060 Hb_002849_160 Hb_002849_160 Hb_010810_110--Hb_002849_160 Hb_016834_010 Hb_016834_010 Hb_010810_110--Hb_016834_010 Hb_010810_110--Hb_002477_220 Hb_000283_150 Hb_000283_150 Hb_002477_220--Hb_000283_150 Hb_007380_040 Hb_007380_040 Hb_002477_220--Hb_007380_040 Hb_000406_060 Hb_000406_060 Hb_002477_220--Hb_000406_060 Hb_002477_220--Hb_000022_170 Hb_003640_030 Hb_003640_030 Hb_002477_220--Hb_003640_030 Hb_001636_020 Hb_001636_020 Hb_002477_220--Hb_001636_020 Hb_002090_010 Hb_002090_010 Hb_108557_010--Hb_002090_010 Hb_108557_010--Hb_002888_080 Hb_108557_010--Hb_157029_010 Hb_031474_020 Hb_031474_020 Hb_108557_010--Hb_031474_020 Hb_064106_010 Hb_064106_010 Hb_108557_010--Hb_064106_010 Hb_157029_010--Hb_002888_080 Hb_175841_010 Hb_175841_010 Hb_157029_010--Hb_175841_010 Hb_000130_070 Hb_000130_070 Hb_157029_010--Hb_000130_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447276 0.0720007 0.10892 0 0.0332705 0.281294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.524005 0.127172

CAGE analysis