Hb_099496_010

Information

Type -
Description -
Location Contig99496: 5214-5896
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11400g
description POPTRDRAFT_572597; hypothetical protein
nr
ID XP_011042276.1
description PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I9H2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11400g PE=4 SV=2
Gene Ontology
ID GO:0004526
description ribonucleases p mrp protein subunit pop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099496_010 0.0 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
2 Hb_002780_060 0.1765761895 - - conserved hypothetical protein [Ricinus communis]
3 Hb_170193_020 0.1799705588 - - -
4 Hb_098315_090 0.2201725153 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
5 Hb_011639_040 0.2210710682 - - hypothetical protein M569_08265, partial [Genlisea aurea]
6 Hb_000022_170 0.232206136 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
7 Hb_044005_010 0.2342405647 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
8 Hb_118157_010 0.2352979796 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
9 Hb_000559_070 0.2355535231 - - calcineurin B, putative [Ricinus communis]
10 Hb_002477_220 0.2369010703 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
11 Hb_002851_080 0.2377495713 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
12 Hb_000505_100 0.2430073067 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
13 Hb_011798_030 0.2479161573 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Vitis vinifera]
14 Hb_175841_010 0.2520871149 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
15 Hb_001369_230 0.2536053249 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
16 Hb_000041_060 0.2595186768 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_002918_020 0.2612902039 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
18 Hb_007380_040 0.2621541811 - - receptor-kinase, putative [Ricinus communis]
19 Hb_000406_060 0.2628456305 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
20 Hb_011360_060 0.2655047717 - - glycogen phosphorylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_099496_010 Hb_099496_010 Hb_002780_060 Hb_002780_060 Hb_099496_010--Hb_002780_060 Hb_170193_020 Hb_170193_020 Hb_099496_010--Hb_170193_020 Hb_098315_090 Hb_098315_090 Hb_099496_010--Hb_098315_090 Hb_011639_040 Hb_011639_040 Hb_099496_010--Hb_011639_040 Hb_000022_170 Hb_000022_170 Hb_099496_010--Hb_000022_170 Hb_044005_010 Hb_044005_010 Hb_099496_010--Hb_044005_010 Hb_002780_060--Hb_000022_170 Hb_000505_100 Hb_000505_100 Hb_002780_060--Hb_000505_100 Hb_000800_110 Hb_000800_110 Hb_002780_060--Hb_000800_110 Hb_000175_120 Hb_000175_120 Hb_002780_060--Hb_000175_120 Hb_005892_020 Hb_005892_020 Hb_002780_060--Hb_005892_020 Hb_000035_010 Hb_000035_010 Hb_002780_060--Hb_000035_010 Hb_170193_020--Hb_044005_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030 Hb_000823_010 Hb_000823_010 Hb_098315_090--Hb_000823_010 Hb_000106_020 Hb_000106_020 Hb_098315_090--Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_000455_130 Hb_000455_130 Hb_098315_090--Hb_000455_130 Hb_000215_160 Hb_000215_160 Hb_011639_040--Hb_000215_160 Hb_002851_080 Hb_002851_080 Hb_011639_040--Hb_002851_080 Hb_000406_060 Hb_000406_060 Hb_011639_040--Hb_000406_060 Hb_001006_340 Hb_001006_340 Hb_011639_040--Hb_001006_340 Hb_011639_040--Hb_098315_090 Hb_183443_010 Hb_183443_010 Hb_011639_040--Hb_183443_010 Hb_000940_150 Hb_000940_150 Hb_000022_170--Hb_000940_150 Hb_000022_170--Hb_000175_120 Hb_000631_110 Hb_000631_110 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_004218_250 Hb_004218_250 Hb_000022_170--Hb_004218_250 Hb_000022_170--Hb_000800_110 Hb_007078_010 Hb_007078_010 Hb_044005_010--Hb_007078_010 Hb_022958_010 Hb_022958_010 Hb_044005_010--Hb_022958_010 Hb_001496_080 Hb_001496_080 Hb_044005_010--Hb_001496_080 Hb_063943_010 Hb_063943_010 Hb_044005_010--Hb_063943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.413722 0.396058 0.386359 0.0899286 0.12988 0.436964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.210667 1.39618 0.695911

CAGE analysis