Hb_002780_060

Information

Type -
Description -
Location Contig2780: 96491-104287
Sequence    

Annotation

kegg
ID rcu:RCOM_0803950
description hypothetical protein
nr
ID XP_002516601.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29013: 103899-104633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002780_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000022_170 0.145822549 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
3 Hb_000505_100 0.1540253116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
4 Hb_000800_110 0.1618266623 - - NAD dehydrogenase, putative [Ricinus communis]
5 Hb_000175_120 0.1629582993 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
6 Hb_005892_020 0.1647268329 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
7 Hb_000035_010 0.1651560595 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
8 Hb_000940_150 0.1661276783 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
9 Hb_000022_160 0.1675831056 - - -
10 Hb_000631_110 0.1676130778 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
11 Hb_001223_010 0.1710810229 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
12 Hb_001006_010 0.1731198419 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_007546_030 0.1735003571 - - transcription cofactor, putative [Ricinus communis]
14 Hb_099496_010 0.1765761895 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
15 Hb_000950_060 0.1771462076 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
16 Hb_007472_080 0.1807627947 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_001369_230 0.1825496254 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
18 Hb_000940_170 0.1847452087 - - hypothetical protein VITISV_029834 [Vitis vinifera]
19 Hb_004218_250 0.185567508 - - PREDICTED: beta-galactosidase [Jatropha curcas]
20 Hb_000049_250 0.1865873829 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002780_060 Hb_002780_060 Hb_000022_170 Hb_000022_170 Hb_002780_060--Hb_000022_170 Hb_000505_100 Hb_000505_100 Hb_002780_060--Hb_000505_100 Hb_000800_110 Hb_000800_110 Hb_002780_060--Hb_000800_110 Hb_000175_120 Hb_000175_120 Hb_002780_060--Hb_000175_120 Hb_005892_020 Hb_005892_020 Hb_002780_060--Hb_005892_020 Hb_000035_010 Hb_000035_010 Hb_002780_060--Hb_000035_010 Hb_000940_150 Hb_000940_150 Hb_000022_170--Hb_000940_150 Hb_000022_170--Hb_000175_120 Hb_000631_110 Hb_000631_110 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_004218_250 Hb_004218_250 Hb_000022_170--Hb_004218_250 Hb_000022_170--Hb_000800_110 Hb_003626_050 Hb_003626_050 Hb_000505_100--Hb_003626_050 Hb_006829_100 Hb_006829_100 Hb_000505_100--Hb_006829_100 Hb_000122_080 Hb_000122_080 Hb_000505_100--Hb_000122_080 Hb_000041_060 Hb_000041_060 Hb_000505_100--Hb_000041_060 Hb_000505_100--Hb_000035_010 Hb_000049_250 Hb_000049_250 Hb_000505_100--Hb_000049_250 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000800_110--Hb_000035_010 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000800_110--Hb_000950_060 Hb_000175_120--Hb_000940_150 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000175_120--Hb_000035_010 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_000940_170 Hb_000940_170 Hb_005892_020--Hb_000940_170 Hb_021297_020 Hb_021297_020 Hb_005892_020--Hb_021297_020 Hb_000022_160 Hb_000022_160 Hb_005892_020--Hb_000022_160 Hb_001381_050 Hb_001381_050 Hb_005892_020--Hb_001381_050 Hb_003058_200 Hb_003058_200 Hb_005892_020--Hb_003058_200 Hb_012738_030 Hb_012738_030 Hb_005892_020--Hb_012738_030 Hb_000035_010--Hb_000049_250 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000035_010--Hb_000950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528075 0.962138 0.581346 0.40687 0.183329 1.12426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191495 0.0753083 0.347555 2.11766 1.391

CAGE analysis