Hb_000505_100

Information

Type -
Description -
Location Contig505: 111940-115712
Sequence    

Annotation

kegg
ID vvi:100250663
description protein SRG1-like
nr
ID XP_002263617.2
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A061GP03
description 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_038190 PE=4 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46002: 112847-113951 , PASA_asmbl_46003: 114303-114829 , PASA_asmbl_46005: 115277-115573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
2 Hb_003626_050 0.1047590698 - - malic enzyme, putative [Ricinus communis]
3 Hb_006829_100 0.1379206607 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000122_080 0.1417325503 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
5 Hb_000041_060 0.1442705654 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_000035_010 0.1478433278 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
7 Hb_000049_250 0.1483401337 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
8 Hb_001369_230 0.1505022789 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
9 Hb_002780_060 0.1540253116 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000271_120 0.1555309446 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
11 Hb_132101_010 0.1569014435 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
12 Hb_001497_060 0.1574744455 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
13 Hb_016734_020 0.1593092352 - - sugar transporter, putative [Ricinus communis]
14 Hb_000834_230 0.1595784522 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
15 Hb_001322_180 0.1597125898 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
16 Hb_009732_020 0.159715299 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_000157_070 0.1602363128 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
18 Hb_002213_090 0.164452922 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
19 Hb_098315_090 0.1644731352 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
20 Hb_000559_070 0.1650507342 - - calcineurin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000505_100 Hb_000505_100 Hb_003626_050 Hb_003626_050 Hb_000505_100--Hb_003626_050 Hb_006829_100 Hb_006829_100 Hb_000505_100--Hb_006829_100 Hb_000122_080 Hb_000122_080 Hb_000505_100--Hb_000122_080 Hb_000041_060 Hb_000041_060 Hb_000505_100--Hb_000041_060 Hb_000035_010 Hb_000035_010 Hb_000505_100--Hb_000035_010 Hb_000049_250 Hb_000049_250 Hb_000505_100--Hb_000049_250 Hb_002213_090 Hb_002213_090 Hb_003626_050--Hb_002213_090 Hb_000157_070 Hb_000157_070 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_001500_070 Hb_001500_070 Hb_003626_050--Hb_001500_070 Hb_003626_050--Hb_006829_100 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230 Hb_002596_060 Hb_002596_060 Hb_000122_080--Hb_002596_060 Hb_001733_030 Hb_001733_030 Hb_000122_080--Hb_001733_030 Hb_006501_010 Hb_006501_010 Hb_000122_080--Hb_006501_010 Hb_000122_080--Hb_006829_100 Hb_000122_080--Hb_019840_030 Hb_002259_080 Hb_002259_080 Hb_000122_080--Hb_002259_080 Hb_000808_170 Hb_000808_170 Hb_000041_060--Hb_000808_170 Hb_001369_230 Hb_001369_230 Hb_000041_060--Hb_001369_230 Hb_000041_060--Hb_001500_070 Hb_000041_060--Hb_003626_050 Hb_000347_110 Hb_000347_110 Hb_000041_060--Hb_000347_110 Hb_004129_050 Hb_004129_050 Hb_000041_060--Hb_004129_050 Hb_000035_010--Hb_000049_250 Hb_000175_120 Hb_000175_120 Hb_000035_010--Hb_000175_120 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000950_060 Hb_000950_060 Hb_000035_010--Hb_000950_060 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000321_090 Hb_000321_090 Hb_000049_250--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07808 1.95204 2.9528 1.43826 0.753216 2.60921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.63515 0.677108 0.796647 5.63976 2.22004

CAGE analysis