Hb_007078_010

Information

Type -
Description -
Location Contig7078: 6370-10844
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007078_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_044005_010 0.2342882936 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
3 Hb_000575_070 0.2399258962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
4 Hb_005539_230 0.2518335915 - - hypothetical protein L484_027799 [Morus notabilis]
5 Hb_170193_020 0.2535502758 - - -
6 Hb_001085_210 0.2772083982 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
7 Hb_009848_050 0.2866235522 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
8 Hb_185058_020 0.2905369038 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
9 Hb_001096_020 0.2929535849 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
10 Hb_000312_050 0.2934789153 - - transcription factor, putative [Ricinus communis]
11 Hb_000816_260 0.2943535663 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_113119_010 0.2975505343 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_021650_020 0.2997009446 - - nitrate transporter, putative [Ricinus communis]
14 Hb_139848_010 0.2998329974 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
15 Hb_021854_020 0.3011129151 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
16 Hb_003186_040 0.3018785755 - - PREDICTED: protein DENND6A [Jatropha curcas]
17 Hb_022958_010 0.3020290051 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
18 Hb_013691_050 0.3033759652 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
19 Hb_005588_100 0.3035386711 - - protein phosphatase, putative [Ricinus communis]
20 Hb_001671_090 0.3062942992 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007078_010 Hb_007078_010 Hb_044005_010 Hb_044005_010 Hb_007078_010--Hb_044005_010 Hb_000575_070 Hb_000575_070 Hb_007078_010--Hb_000575_070 Hb_005539_230 Hb_005539_230 Hb_007078_010--Hb_005539_230 Hb_170193_020 Hb_170193_020 Hb_007078_010--Hb_170193_020 Hb_001085_210 Hb_001085_210 Hb_007078_010--Hb_001085_210 Hb_009848_050 Hb_009848_050 Hb_007078_010--Hb_009848_050 Hb_044005_010--Hb_170193_020 Hb_099496_010 Hb_099496_010 Hb_044005_010--Hb_099496_010 Hb_022958_010 Hb_022958_010 Hb_044005_010--Hb_022958_010 Hb_001496_080 Hb_001496_080 Hb_044005_010--Hb_001496_080 Hb_063943_010 Hb_063943_010 Hb_044005_010--Hb_063943_010 Hb_000173_260 Hb_000173_260 Hb_000575_070--Hb_000173_260 Hb_011360_060 Hb_011360_060 Hb_000575_070--Hb_011360_060 Hb_001366_050 Hb_001366_050 Hb_000575_070--Hb_001366_050 Hb_000699_050 Hb_000699_050 Hb_000575_070--Hb_000699_050 Hb_001358_120 Hb_001358_120 Hb_000575_070--Hb_001358_120 Hb_000457_130 Hb_000457_130 Hb_000575_070--Hb_000457_130 Hb_118157_010 Hb_118157_010 Hb_005539_230--Hb_118157_010 Hb_118157_020 Hb_118157_020 Hb_005539_230--Hb_118157_020 Hb_000409_040 Hb_000409_040 Hb_005539_230--Hb_000409_040 Hb_005539_230--Hb_099496_010 Hb_000117_140 Hb_000117_140 Hb_005539_230--Hb_000117_140 Hb_170193_020--Hb_099496_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_002780_060 Hb_002780_060 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030 Hb_185058_020 Hb_185058_020 Hb_001085_210--Hb_185058_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_001096_020 Hb_001096_020 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_009848_060 Hb_009848_060 Hb_009848_050--Hb_009848_060 Hb_010490_060 Hb_010490_060 Hb_009848_050--Hb_010490_060 Hb_009848_050--Hb_185058_020 Hb_014324_010 Hb_014324_010 Hb_009848_050--Hb_014324_010 Hb_000137_060 Hb_000137_060 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160285 0.0194629 0.194754 0.0653096 0 0.0171088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.129614 0.378916 0.360355

CAGE analysis