Hb_000117_140

Information

Type -
Description -
Location Contig117: 203453-205166
Sequence    

Annotation

kegg
ID pop:POPTR_0008s185501
description hypothetical protein
nr
ID KDO38018.1
description hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
swissprot
ID Q9ZQQ7
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=3 SV=1
trembl
ID U5G626
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s185501g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_140 0.0 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
2 Hb_000996_160 0.1687953297 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000574_370 0.1820265265 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_001951_070 0.1921868691 - - putative protein [Arabidopsis thaliana]
5 Hb_004635_070 0.1932423013 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
6 Hb_007290_070 0.1940256048 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
7 Hb_001821_060 0.1980417566 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
8 Hb_005214_070 0.1991820906 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
9 Hb_013968_010 0.2000045313 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
10 Hb_002943_010 0.2062871731 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
11 Hb_012033_010 0.2068971741 - - PREDICTED: histone H1.2-like [Jatropha curcas]
12 Hb_001499_070 0.2095760502 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
13 Hb_000906_070 0.2095994923 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
14 Hb_004346_040 0.2100593696 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
15 Hb_003226_090 0.2116720671 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
16 Hb_002942_140 0.2124722948 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
17 Hb_002603_010 0.2165161081 - - unnamed protein product [Vitis vinifera]
18 Hb_000477_070 0.219014558 - - histone h2a, putative [Ricinus communis]
19 Hb_001840_110 0.2190618612 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
20 Hb_000096_110 0.2200835023 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000117_140 Hb_000117_140 Hb_000996_160 Hb_000996_160 Hb_000117_140--Hb_000996_160 Hb_000574_370 Hb_000574_370 Hb_000117_140--Hb_000574_370 Hb_001951_070 Hb_001951_070 Hb_000117_140--Hb_001951_070 Hb_004635_070 Hb_004635_070 Hb_000117_140--Hb_004635_070 Hb_007290_070 Hb_007290_070 Hb_000117_140--Hb_007290_070 Hb_001821_060 Hb_001821_060 Hb_000117_140--Hb_001821_060 Hb_000996_160--Hb_007290_070 Hb_083078_010 Hb_083078_010 Hb_000996_160--Hb_083078_010 Hb_001499_070 Hb_001499_070 Hb_000996_160--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_000996_160--Hb_001408_020 Hb_000996_160--Hb_001821_060 Hb_002809_160 Hb_002809_160 Hb_000996_160--Hb_002809_160 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_002603_010 Hb_002603_010 Hb_000574_370--Hb_002603_010 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_009193_060 Hb_009193_060 Hb_000574_370--Hb_009193_060 Hb_002833_020 Hb_002833_020 Hb_000574_370--Hb_002833_020 Hb_001430_100 Hb_001430_100 Hb_001951_070--Hb_001430_100 Hb_000997_290 Hb_000997_290 Hb_001951_070--Hb_000997_290 Hb_000066_040 Hb_000066_040 Hb_001951_070--Hb_000066_040 Hb_001951_070--Hb_001821_060 Hb_009193_010 Hb_009193_010 Hb_001951_070--Hb_009193_010 Hb_000445_370 Hb_000445_370 Hb_001951_070--Hb_000445_370 Hb_150651_020 Hb_150651_020 Hb_004635_070--Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_004635_070--Hb_001001_120 Hb_001953_100 Hb_001953_100 Hb_004635_070--Hb_001953_100 Hb_007894_190 Hb_007894_190 Hb_004635_070--Hb_007894_190 Hb_000009_020 Hb_000009_020 Hb_004635_070--Hb_000009_020 Hb_050847_040 Hb_050847_040 Hb_004635_070--Hb_050847_040 Hb_007290_070--Hb_001499_070 Hb_007290_070--Hb_001408_020 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_013968_010 Hb_013968_010 Hb_001821_060--Hb_013968_010 Hb_001821_060--Hb_009193_010 Hb_000256_160 Hb_000256_160 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161131 0.403468 0.772252 0.260522 0.171534 0.0182432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.116731 0.489662 0.714297

CAGE analysis