Hb_000996_160

Information

Type -
Description -
Location Contig996: 154111-164109
Sequence    

Annotation

kegg
ID rcu:RCOM_1686120
description hypothetical protein
nr
ID XP_002509767.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RC83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1686120 PE=4 SV=1
Gene Ontology
ID GO:0006139
description s1 rna-binding domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007290_070 0.1181271188 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
3 Hb_083078_010 0.1313895823 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
4 Hb_001499_070 0.1343969417 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
5 Hb_001408_020 0.1360519897 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
6 Hb_001821_060 0.1401595967 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
7 Hb_002809_160 0.14126381 - - PREDICTED: protein FAM63A [Jatropha curcas]
8 Hb_000243_400 0.1412741959 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_187005_010 0.1412786165 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
10 Hb_001488_210 0.1434298356 - - PREDICTED: protein RIK [Jatropha curcas]
11 Hb_000906_070 0.1462884634 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
12 Hb_013968_010 0.1465394239 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_006794_020 0.1468194994 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
14 Hb_004837_020 0.1468409001 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
15 Hb_143629_020 0.1473531159 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_001484_090 0.1477150618 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
17 Hb_000320_360 0.1493583879 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
18 Hb_115513_040 0.1512888564 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013399_090 0.1517061799 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
20 Hb_001496_120 0.1542441339 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000996_160 Hb_000996_160 Hb_007290_070 Hb_007290_070 Hb_000996_160--Hb_007290_070 Hb_083078_010 Hb_083078_010 Hb_000996_160--Hb_083078_010 Hb_001499_070 Hb_001499_070 Hb_000996_160--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_000996_160--Hb_001408_020 Hb_001821_060 Hb_001821_060 Hb_000996_160--Hb_001821_060 Hb_002809_160 Hb_002809_160 Hb_000996_160--Hb_002809_160 Hb_007290_070--Hb_001499_070 Hb_007290_070--Hb_001408_020 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_001514_240 Hb_001514_240 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001499_070--Hb_001408_020 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_001408_020--Hb_002809_160 Hb_001408_020--Hb_000227_320 Hb_001408_020--Hb_187005_010 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_001821_060--Hb_013968_010 Hb_009193_010 Hb_009193_010 Hb_001821_060--Hb_009193_010 Hb_000256_160 Hb_000256_160 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.537416 1.73003 1.81686 0.924911 0.836413 0.275382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0925316 0.12741 0.137979 1.65138 2.19113

CAGE analysis