Hb_005539_230

Information

Type -
Description -
Location Contig5539: 161140-161765
Sequence    

Annotation

kegg
ID gmx:100786983
description uncharacterized LOC100786983
nr
ID XP_010100486.1
description hypothetical protein L484_027799 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RL00
description Uncharacterized protein OS=Morus notabilis GN=L484_027799 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_230 0.0 - - hypothetical protein L484_027799 [Morus notabilis]
2 Hb_118157_010 0.2203416489 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
3 Hb_118157_020 0.2383698701 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
4 Hb_007078_010 0.2518335915 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000409_040 0.2693511226 transcription factor TF Family: AP2 hypothetical protein POPTR_0017s11470g [Populus trichocarpa]
6 Hb_099496_010 0.2696007046 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
7 Hb_000117_140 0.2757631324 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
8 Hb_000816_260 0.2805250731 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_000312_050 0.2842707899 - - transcription factor, putative [Ricinus communis]
10 Hb_000575_070 0.2851369608 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
11 Hb_004920_110 0.2864175808 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012366_050 0.2968161198 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
13 Hb_001240_050 0.2974057256 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
14 Hb_170193_020 0.298769996 - - -
15 Hb_000012_320 0.2991046878 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
16 Hb_000254_110 0.3002753529 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
17 Hb_021650_020 0.3021631735 - - nitrate transporter, putative [Ricinus communis]
18 Hb_008725_120 0.3039349403 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
19 Hb_000350_050 0.3045980906 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
20 Hb_000062_290 0.3051706022 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]

Gene co-expression network

sample Hb_005539_230 Hb_005539_230 Hb_118157_010 Hb_118157_010 Hb_005539_230--Hb_118157_010 Hb_118157_020 Hb_118157_020 Hb_005539_230--Hb_118157_020 Hb_007078_010 Hb_007078_010 Hb_005539_230--Hb_007078_010 Hb_000409_040 Hb_000409_040 Hb_005539_230--Hb_000409_040 Hb_099496_010 Hb_099496_010 Hb_005539_230--Hb_099496_010 Hb_000117_140 Hb_000117_140 Hb_005539_230--Hb_000117_140 Hb_118157_010--Hb_118157_020 Hb_000271_120 Hb_000271_120 Hb_118157_010--Hb_000271_120 Hb_000345_340 Hb_000345_340 Hb_118157_010--Hb_000345_340 Hb_004064_060 Hb_004064_060 Hb_118157_010--Hb_004064_060 Hb_003266_020 Hb_003266_020 Hb_118157_010--Hb_003266_020 Hb_000007_410 Hb_000007_410 Hb_118157_010--Hb_000007_410 Hb_000406_190 Hb_000406_190 Hb_118157_020--Hb_000406_190 Hb_011853_010 Hb_011853_010 Hb_118157_020--Hb_011853_010 Hb_149515_010 Hb_149515_010 Hb_118157_020--Hb_149515_010 Hb_011909_010 Hb_011909_010 Hb_118157_020--Hb_011909_010 Hb_000866_110 Hb_000866_110 Hb_118157_020--Hb_000866_110 Hb_044005_010 Hb_044005_010 Hb_007078_010--Hb_044005_010 Hb_000575_070 Hb_000575_070 Hb_007078_010--Hb_000575_070 Hb_170193_020 Hb_170193_020 Hb_007078_010--Hb_170193_020 Hb_001085_210 Hb_001085_210 Hb_007078_010--Hb_001085_210 Hb_009848_050 Hb_009848_050 Hb_007078_010--Hb_009848_050 Hb_000703_180 Hb_000703_180 Hb_000409_040--Hb_000703_180 Hb_005523_050 Hb_005523_050 Hb_000409_040--Hb_005523_050 Hb_000737_010 Hb_000737_010 Hb_000409_040--Hb_000737_010 Hb_000574_370 Hb_000574_370 Hb_000409_040--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000409_040--Hb_004864_020 Hb_006681_030 Hb_006681_030 Hb_000409_040--Hb_006681_030 Hb_002780_060 Hb_002780_060 Hb_099496_010--Hb_002780_060 Hb_099496_010--Hb_170193_020 Hb_098315_090 Hb_098315_090 Hb_099496_010--Hb_098315_090 Hb_011639_040 Hb_011639_040 Hb_099496_010--Hb_011639_040 Hb_000022_170 Hb_000022_170 Hb_099496_010--Hb_000022_170 Hb_099496_010--Hb_044005_010 Hb_000996_160 Hb_000996_160 Hb_000117_140--Hb_000996_160 Hb_000117_140--Hb_000574_370 Hb_001951_070 Hb_001951_070 Hb_000117_140--Hb_001951_070 Hb_004635_070 Hb_004635_070 Hb_000117_140--Hb_004635_070 Hb_007290_070 Hb_007290_070 Hb_000117_140--Hb_007290_070 Hb_001821_060 Hb_001821_060 Hb_000117_140--Hb_001821_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.265996 0.336806 0.995455 0.0529571 0 0.167485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.31801 0.801029 0.702789

CAGE analysis