Hb_000575_070

Information

Type -
Description -
Location Contig575: 101960-105142
Sequence    

Annotation

kegg
ID egr:104420853
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_011002880.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A059ATL9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02665 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_070 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
2 Hb_000173_260 0.1855385301 - - hypothetical protein L484_010046 [Morus notabilis]
3 Hb_011360_060 0.1869014995 - - glycogen phosphorylase, putative [Ricinus communis]
4 Hb_001366_050 0.1951187138 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
5 Hb_000699_050 0.2015252279 - - -
6 Hb_001358_120 0.2278181738 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
7 Hb_000457_130 0.2281707422 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
8 Hb_000265_080 0.2296327476 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
9 Hb_000343_040 0.2303612382 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
10 Hb_005333_210 0.2329496415 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
11 Hb_000473_070 0.2335674926 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
12 Hb_033594_100 0.2349081897 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000661_230 0.2355762221 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
14 Hb_007078_010 0.2399258962 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002200_060 0.2400543151 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
16 Hb_000844_090 0.2421251614 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
17 Hb_002272_230 0.2432277231 - - sodium/hydrogen exchanger, putative [Ricinus communis]
18 Hb_009296_060 0.2446079296 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_000720_090 0.2453902774 transcription factor TF Family: MYB myb, putative [Ricinus communis]
20 Hb_000347_110 0.248128657 - - BnaA05g25330D [Brassica napus]

Gene co-expression network

sample Hb_000575_070 Hb_000575_070 Hb_000173_260 Hb_000173_260 Hb_000575_070--Hb_000173_260 Hb_011360_060 Hb_011360_060 Hb_000575_070--Hb_011360_060 Hb_001366_050 Hb_001366_050 Hb_000575_070--Hb_001366_050 Hb_000699_050 Hb_000699_050 Hb_000575_070--Hb_000699_050 Hb_001358_120 Hb_001358_120 Hb_000575_070--Hb_001358_120 Hb_000457_130 Hb_000457_130 Hb_000575_070--Hb_000457_130 Hb_000347_110 Hb_000347_110 Hb_000173_260--Hb_000347_110 Hb_000173_260--Hb_011360_060 Hb_004041_100 Hb_004041_100 Hb_000173_260--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000173_260--Hb_000625_030 Hb_002272_230 Hb_002272_230 Hb_000173_260--Hb_002272_230 Hb_000181_020 Hb_000181_020 Hb_000173_260--Hb_000181_020 Hb_011360_060--Hb_000347_110 Hb_011360_060--Hb_000181_020 Hb_002026_070 Hb_002026_070 Hb_011360_060--Hb_002026_070 Hb_000041_060 Hb_000041_060 Hb_011360_060--Hb_000041_060 Hb_011360_060--Hb_000625_030 Hb_011440_010 Hb_011440_010 Hb_001366_050--Hb_011440_010 Hb_005614_030 Hb_005614_030 Hb_001366_050--Hb_005614_030 Hb_005333_210 Hb_005333_210 Hb_001366_050--Hb_005333_210 Hb_170878_070 Hb_170878_070 Hb_001366_050--Hb_170878_070 Hb_001366_050--Hb_000457_130 Hb_001300_140 Hb_001300_140 Hb_001366_050--Hb_001300_140 Hb_009296_060 Hb_009296_060 Hb_000699_050--Hb_009296_060 Hb_000343_040 Hb_000343_040 Hb_000699_050--Hb_000343_040 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000699_050--Hb_000457_130 Hb_000699_050--Hb_001366_050 Hb_000753_180 Hb_000753_180 Hb_000699_050--Hb_000753_180 Hb_009150_060 Hb_009150_060 Hb_001358_120--Hb_009150_060 Hb_003842_010 Hb_003842_010 Hb_001358_120--Hb_003842_010 Hb_001358_120--Hb_001300_140 Hb_001358_120--Hb_011440_010 Hb_002304_190 Hb_002304_190 Hb_001358_120--Hb_002304_190 Hb_002475_030 Hb_002475_030 Hb_001358_120--Hb_002475_030 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001597_110 Hb_001597_110 Hb_000457_130--Hb_001597_110 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000844_090 Hb_000844_090 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051094 0.0448157 0.153053 0.0591908 0 0.0197266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0166763 0 0.0250435 0.432352 0.195485

CAGE analysis