Hb_001496_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1496: 60767-68603
Sequence    

Annotation

kegg
ID pxb:103931503
description TMV resistance protein N-like
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KV39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04985 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12465: 61007-62104 , PASA_asmbl_12466: 63398-64863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_080 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_015978_050 0.2142586536 - - -
3 Hb_154141_010 0.2253323746 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_002047_020 0.2342618 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
5 Hb_085083_020 0.237222613 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
6 Hb_022958_010 0.2415448005 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
7 Hb_000236_450 0.2457249346 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_044005_010 0.2510813871 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
9 Hb_000964_070 0.259276006 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
10 Hb_001341_020 0.2634100319 - - Uncharacterised protein [Bordetella pertussis]
11 Hb_066487_010 0.2702340597 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000010_290 0.2724557042 - - -
13 Hb_006905_030 0.2844204652 - - -
14 Hb_032876_030 0.2889080822 - - -
15 Hb_008123_010 0.2920260871 - - -
16 Hb_001461_020 0.2931665039 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
17 Hb_002226_050 0.2935653772 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
18 Hb_001188_120 0.29440772 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
19 Hb_044380_020 0.2945414683 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_011639_040 0.2945498096 - - hypothetical protein M569_08265, partial [Genlisea aurea]

Gene co-expression network

sample Hb_001496_080 Hb_001496_080 Hb_015978_050 Hb_015978_050 Hb_001496_080--Hb_015978_050 Hb_154141_010 Hb_154141_010 Hb_001496_080--Hb_154141_010 Hb_002047_020 Hb_002047_020 Hb_001496_080--Hb_002047_020 Hb_085083_020 Hb_085083_020 Hb_001496_080--Hb_085083_020 Hb_022958_010 Hb_022958_010 Hb_001496_080--Hb_022958_010 Hb_000236_450 Hb_000236_450 Hb_001496_080--Hb_000236_450 Hb_015978_050--Hb_000236_450 Hb_016734_030 Hb_016734_030 Hb_015978_050--Hb_016734_030 Hb_005511_090 Hb_005511_090 Hb_015978_050--Hb_005511_090 Hb_032258_010 Hb_032258_010 Hb_015978_050--Hb_032258_010 Hb_001341_020 Hb_001341_020 Hb_015978_050--Hb_001341_020 Hb_154141_010--Hb_022958_010 Hb_000599_230 Hb_000599_230 Hb_154141_010--Hb_000599_230 Hb_006905_030 Hb_006905_030 Hb_154141_010--Hb_006905_030 Hb_090530_010 Hb_090530_010 Hb_154141_010--Hb_090530_010 Hb_000010_290 Hb_000010_290 Hb_154141_010--Hb_000010_290 Hb_007313_100 Hb_007313_100 Hb_154141_010--Hb_007313_100 Hb_001188_120 Hb_001188_120 Hb_002047_020--Hb_001188_120 Hb_002047_020--Hb_001341_020 Hb_003186_040 Hb_003186_040 Hb_002047_020--Hb_003186_040 Hb_133047_020 Hb_133047_020 Hb_002047_020--Hb_133047_020 Hb_001085_210 Hb_001085_210 Hb_002047_020--Hb_001085_210 Hb_003175_110 Hb_003175_110 Hb_085083_020--Hb_003175_110 Hb_000964_070 Hb_000964_070 Hb_085083_020--Hb_000964_070 Hb_066487_010 Hb_066487_010 Hb_085083_020--Hb_066487_010 Hb_063943_010 Hb_063943_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_085083_020--Hb_090530_010 Hb_022958_010--Hb_090530_010 Hb_006274_050 Hb_006274_050 Hb_022958_010--Hb_006274_050 Hb_022958_010--Hb_006905_030 Hb_022958_010--Hb_001341_020 Hb_032876_030 Hb_032876_030 Hb_022958_010--Hb_032876_030 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80575 0.0588391 0.366603 0.545099 1.42157 0.730005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197151 0.680943 1.93663 4.46226 6.90724

CAGE analysis