Hb_066487_010

Information

Type -
Description -
Location Contig66487: 2-1315
Sequence    

Annotation

kegg
ID rcu:RCOM_0255030
description hypothetical protein
nr
ID XP_002530091.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P54453
description Uncharacterized protein YqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1
trembl
ID B9SVS2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255030 PE=4 SV=1
Gene Ontology
ID GO:0005525
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53154: 752-1381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066487_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012098_070 0.1350491824 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
3 Hb_020665_010 0.138649458 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
4 Hb_001005_050 0.141201045 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
5 Hb_007820_010 0.1552461676 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
6 Hb_003467_030 0.1560845132 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_006274_050 0.1562309816 - - hypothetical protein VITISV_022618 [Vitis vinifera]
8 Hb_007922_020 0.1580058708 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
9 Hb_002055_040 0.159802533 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
10 Hb_009486_040 0.1617516569 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001435_030 0.1625200251 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
12 Hb_009270_010 0.1642741847 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
13 Hb_002667_050 0.1646324394 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
14 Hb_002099_080 0.1692514478 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
15 Hb_000062_450 0.169800572 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
16 Hb_003089_020 0.1733698607 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
17 Hb_145915_010 0.1737426877 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
18 Hb_004020_020 0.1740959815 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
19 Hb_005250_030 0.1745435873 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
20 Hb_011616_020 0.1750617728 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]

Gene co-expression network

sample Hb_066487_010 Hb_066487_010 Hb_012098_070 Hb_012098_070 Hb_066487_010--Hb_012098_070 Hb_020665_010 Hb_020665_010 Hb_066487_010--Hb_020665_010 Hb_001005_050 Hb_001005_050 Hb_066487_010--Hb_001005_050 Hb_007820_010 Hb_007820_010 Hb_066487_010--Hb_007820_010 Hb_003467_030 Hb_003467_030 Hb_066487_010--Hb_003467_030 Hb_006274_050 Hb_006274_050 Hb_066487_010--Hb_006274_050 Hb_099270_030 Hb_099270_030 Hb_012098_070--Hb_099270_030 Hb_005488_170 Hb_005488_170 Hb_012098_070--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_012098_070--Hb_000815_170 Hb_003607_070 Hb_003607_070 Hb_012098_070--Hb_003607_070 Hb_005801_020 Hb_005801_020 Hb_012098_070--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_012098_070--Hb_005250_030 Hb_145915_010 Hb_145915_010 Hb_020665_010--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_020665_010--Hb_001005_050 Hb_004680_120 Hb_004680_120 Hb_001005_050--Hb_004680_120 Hb_002667_050 Hb_002667_050 Hb_001005_050--Hb_002667_050 Hb_003544_140 Hb_003544_140 Hb_001005_050--Hb_003544_140 Hb_001005_050--Hb_007922_020 Hb_011228_010 Hb_011228_010 Hb_001005_050--Hb_011228_010 Hb_000261_060 Hb_000261_060 Hb_001005_050--Hb_000261_060 Hb_002099_080 Hb_002099_080 Hb_007820_010--Hb_002099_080 Hb_002055_040 Hb_002055_040 Hb_007820_010--Hb_002055_040 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_003089_020 Hb_003089_020 Hb_006274_050--Hb_003089_020 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_006274_050--Hb_003467_030 Hb_006274_050--Hb_003994_110 Hb_006274_050--Hb_001435_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2383 2.88236 1.50188 3.35168 4.83362 6.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47721 1.97739 10.5485 6.54471 17.7587

CAGE analysis