Hb_004228_040

Information

Type -
Description -
Location Contig4228: 56680-57604
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_040 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_001652_040 0.2047605135 - - PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]
3 Hb_108557_010 0.2059529024 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_002888_080 0.2226696923 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
5 Hb_157029_010 0.2234760819 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
6 Hb_001225_060 0.2466213341 - - BnaC03g58850D [Brassica napus]
7 Hb_033286_020 0.2538096652 - - -
8 Hb_000072_040 0.2540873435 - - -
9 Hb_000291_320 0.2788505126 - - Protein MLO, putative [Ricinus communis]
10 Hb_000130_070 0.2793913537 - - hypothetical protein JCGZ_14738 [Jatropha curcas]
11 Hb_000363_470 0.2801997543 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
12 Hb_175841_010 0.2825933706 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_031474_020 0.2982969703 - - -
14 Hb_006856_020 0.3016095732 - - -
15 Hb_000735_170 0.3059323774 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
16 Hb_099496_010 0.3090473163 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
17 Hb_001496_020 0.3119174311 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
18 Hb_102011_010 0.3149117501 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_002918_020 0.3193261966 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
20 Hb_000454_150 0.3198638381 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004228_040 Hb_004228_040 Hb_001652_040 Hb_001652_040 Hb_004228_040--Hb_001652_040 Hb_108557_010 Hb_108557_010 Hb_004228_040--Hb_108557_010 Hb_002888_080 Hb_002888_080 Hb_004228_040--Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_004228_040--Hb_157029_010 Hb_001225_060 Hb_001225_060 Hb_004228_040--Hb_001225_060 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020 Hb_099496_010 Hb_099496_010 Hb_001652_040--Hb_099496_010 Hb_010810_110 Hb_010810_110 Hb_001652_040--Hb_010810_110 Hb_002477_220 Hb_002477_220 Hb_001652_040--Hb_002477_220 Hb_001652_040--Hb_108557_010 Hb_001652_040--Hb_157029_010 Hb_002090_010 Hb_002090_010 Hb_108557_010--Hb_002090_010 Hb_108557_010--Hb_002888_080 Hb_108557_010--Hb_157029_010 Hb_031474_020 Hb_031474_020 Hb_108557_010--Hb_031474_020 Hb_064106_010 Hb_064106_010 Hb_108557_010--Hb_064106_010 Hb_002888_080--Hb_157029_010 Hb_100332_020 Hb_100332_020 Hb_002888_080--Hb_100332_020 Hb_000832_010 Hb_000832_010 Hb_002888_080--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002888_080--Hb_001871_030 Hb_175841_010 Hb_175841_010 Hb_157029_010--Hb_175841_010 Hb_000130_070 Hb_000130_070 Hb_157029_010--Hb_000130_070 Hb_000363_470 Hb_000363_470 Hb_001225_060--Hb_000363_470 Hb_000291_320 Hb_000291_320 Hb_001225_060--Hb_000291_320 Hb_020581_050 Hb_020581_050 Hb_001225_060--Hb_020581_050 Hb_102011_010 Hb_102011_010 Hb_001225_060--Hb_102011_010 Hb_000177_120 Hb_000177_120 Hb_001225_060--Hb_000177_120 Hb_006856_020 Hb_006856_020 Hb_033286_020--Hb_006856_020 Hb_033286_020--Hb_002888_080 Hb_133047_030 Hb_133047_030 Hb_033286_020--Hb_133047_030 Hb_001496_020 Hb_001496_020 Hb_033286_020--Hb_001496_020 Hb_000832_350 Hb_000832_350 Hb_033286_020--Hb_000832_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0488531 0.046492 0 0.0292642 0.077298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.234667 0.105871

CAGE analysis