Hb_006856_020

Information

Type -
Description -
Location Contig6856: 6963-28962
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006856_020 0.0 - - -
2 Hb_003297_040 0.1609618577 - - Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_000832_350 0.1883391479 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_033286_020 0.21545968 - - -
5 Hb_169514_010 0.2238559064 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
6 Hb_011618_020 0.2271060157 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
7 Hb_001496_020 0.2309839378 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
8 Hb_000363_020 0.2421358373 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_138607_010 0.2491643571 - - hypothetical protein RCOM_0725500 [Ricinus communis]
10 Hb_010810_070 0.2563105066 - - serine/threonine kinase, putative [Ricinus communis]
11 Hb_001086_030 0.2606257472 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_010866_010 0.2607135489 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
13 Hb_003376_280 0.2623654192 - - ATP binding protein, putative [Ricinus communis]
14 Hb_135684_010 0.2649517775 - - hypothetical protein [Pseudomonas tolaasii]
15 Hb_110782_010 0.2654601885 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
16 Hb_009230_020 0.2658948319 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_000052_030 0.2709171274 - - -
18 Hb_003927_030 0.2709552743 - - unnamed protein product [Coffea canephora]
19 Hb_169597_010 0.2711617445 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
20 Hb_002570_050 0.2712335005 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_006856_020 Hb_006856_020 Hb_003297_040 Hb_003297_040 Hb_006856_020--Hb_003297_040 Hb_000832_350 Hb_000832_350 Hb_006856_020--Hb_000832_350 Hb_033286_020 Hb_033286_020 Hb_006856_020--Hb_033286_020 Hb_169514_010 Hb_169514_010 Hb_006856_020--Hb_169514_010 Hb_011618_020 Hb_011618_020 Hb_006856_020--Hb_011618_020 Hb_001496_020 Hb_001496_020 Hb_006856_020--Hb_001496_020 Hb_003297_040--Hb_000832_350 Hb_003297_040--Hb_001496_020 Hb_003297_040--Hb_011618_020 Hb_006261_010 Hb_006261_010 Hb_003297_040--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_003297_040--Hb_007757_090 Hb_001799_220 Hb_001799_220 Hb_000832_350--Hb_001799_220 Hb_030370_010 Hb_030370_010 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001496_140 Hb_001496_140 Hb_000832_350--Hb_001496_140 Hb_002888_080 Hb_002888_080 Hb_033286_020--Hb_002888_080 Hb_004228_040 Hb_004228_040 Hb_033286_020--Hb_004228_040 Hb_133047_030 Hb_133047_030 Hb_033286_020--Hb_133047_030 Hb_033286_020--Hb_001496_020 Hb_033286_020--Hb_000832_350 Hb_000363_020 Hb_000363_020 Hb_169514_010--Hb_000363_020 Hb_003376_280 Hb_003376_280 Hb_169514_010--Hb_003376_280 Hb_110782_010 Hb_110782_010 Hb_169514_010--Hb_110782_010 Hb_010866_010 Hb_010866_010 Hb_169514_010--Hb_010866_010 Hb_135684_010 Hb_135684_010 Hb_169514_010--Hb_135684_010 Hb_002570_050 Hb_002570_050 Hb_169514_010--Hb_002570_050 Hb_169597_010 Hb_169597_010 Hb_011618_020--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_011618_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_011618_020--Hb_000052_030 Hb_000946_020 Hb_000946_020 Hb_011618_020--Hb_000946_020 Hb_011618_020--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_011618_020--Hb_093039_010 Hb_002003_120 Hb_002003_120 Hb_001496_020--Hb_002003_120 Hb_001496_020--Hb_000832_350 Hb_000072_040 Hb_000072_040 Hb_001496_020--Hb_000072_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0163745 0 0 0.0197403 0.0173166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184698 0.145804

CAGE analysis