Hb_002003_120

Information

Type -
Description -
Location Contig2003: 172546-174440
Sequence    

Annotation

kegg
ID rcu:RCOM_1628250
description transporter, putative
nr
ID XP_012084529.1
description PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZ52
description Ubiquitin-like-conjugating enzyme ATG10 OS=Arabidopsis thaliana GN=ATG10 PE=1 SV=1
trembl
ID A0A067LDE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15073 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002003_120 0.0 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
2 Hb_003297_040 0.2403046033 - - Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_115414_010 0.2420621988 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
4 Hb_035726_010 0.2432252763 - - Insulin-degrading enzyme, putative [Ricinus communis]
5 Hb_031474_020 0.2450557069 - - -
6 Hb_039791_010 0.2469328092 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
7 Hb_001221_120 0.2513279403 - - cytochrome P450, putative [Ricinus communis]
8 Hb_002890_050 0.2518181808 - - -
9 Hb_014034_010 0.2520174056 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_001514_160 0.2530281212 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
11 Hb_009142_030 0.2534686561 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_055880_010 0.2541754949 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_031862_030 0.2550983479 - - Cell division cycle protein, putative [Ricinus communis]
14 Hb_001379_020 0.2552014627 - - -
15 Hb_033843_020 0.2557803784 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
16 Hb_159957_020 0.2607096142 - - -
17 Hb_138607_010 0.2611584135 - - hypothetical protein RCOM_0725500 [Ricinus communis]
18 Hb_000159_030 0.2612553843 - - putative glycosyltransferase, partial [Aralia elata]
19 Hb_001003_020 0.2631183297 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
20 Hb_001496_020 0.2638431265 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002003_120 Hb_002003_120 Hb_003297_040 Hb_003297_040 Hb_002003_120--Hb_003297_040 Hb_115414_010 Hb_115414_010 Hb_002003_120--Hb_115414_010 Hb_035726_010 Hb_035726_010 Hb_002003_120--Hb_035726_010 Hb_031474_020 Hb_031474_020 Hb_002003_120--Hb_031474_020 Hb_039791_010 Hb_039791_010 Hb_002003_120--Hb_039791_010 Hb_001221_120 Hb_001221_120 Hb_002003_120--Hb_001221_120 Hb_006856_020 Hb_006856_020 Hb_003297_040--Hb_006856_020 Hb_000832_350 Hb_000832_350 Hb_003297_040--Hb_000832_350 Hb_001496_020 Hb_001496_020 Hb_003297_040--Hb_001496_020 Hb_011618_020 Hb_011618_020 Hb_003297_040--Hb_011618_020 Hb_006261_010 Hb_006261_010 Hb_003297_040--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_003297_040--Hb_007757_090 Hb_115414_010--Hb_035726_010 Hb_033843_020 Hb_033843_020 Hb_115414_010--Hb_033843_020 Hb_001172_030 Hb_001172_030 Hb_115414_010--Hb_001172_030 Hb_035726_020 Hb_035726_020 Hb_115414_010--Hb_035726_020 Hb_022815_020 Hb_022815_020 Hb_115414_010--Hb_022815_020 Hb_001003_020 Hb_001003_020 Hb_115414_010--Hb_001003_020 Hb_035726_010--Hb_033843_020 Hb_035726_010--Hb_035726_020 Hb_035726_010--Hb_001172_030 Hb_035726_010--Hb_022815_020 Hb_035726_010--Hb_001003_020 Hb_142051_010 Hb_142051_010 Hb_031474_020--Hb_142051_010 Hb_031474_020--Hb_003297_040 Hb_108557_010 Hb_108557_010 Hb_031474_020--Hb_108557_010 Hb_008489_010 Hb_008489_010 Hb_031474_020--Hb_008489_010 Hb_000832_340 Hb_000832_340 Hb_031474_020--Hb_000832_340 Hb_039791_010--Hb_001221_120 Hb_002890_050 Hb_002890_050 Hb_039791_010--Hb_002890_050 Hb_014034_010 Hb_014034_010 Hb_039791_010--Hb_014034_010 Hb_001514_160 Hb_001514_160 Hb_039791_010--Hb_001514_160 Hb_009142_030 Hb_009142_030 Hb_039791_010--Hb_009142_030 Hb_055880_010 Hb_055880_010 Hb_039791_010--Hb_055880_010 Hb_001221_120--Hb_002890_050 Hb_001221_120--Hb_014034_010 Hb_001221_120--Hb_001514_160 Hb_001221_120--Hb_009142_030 Hb_001221_120--Hb_055880_010 Hb_159957_020 Hb_159957_020 Hb_001221_120--Hb_159957_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0653894 0 0.0541368 0.34486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0914738 3.52404 0.710794

CAGE analysis