Hb_000832_340

Information

Type -
Description -
Location Contig832: 293491-294250
Sequence    

Annotation

kegg
ID mdm:103406379
description psbP-like protein 2, chloroplastic
nr
ID XP_010243167.1
description PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
swissprot
ID O80634
description Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana GN=PNSL1 PE=1 SV=2
trembl
ID A0A067FNQ8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026701mg PE=4 SV=1
Gene Ontology
ID GO:0009535
description psbp-like protein chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_340 0.0 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
2 Hb_005207_010 0.204063789 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
3 Hb_002233_050 0.2100246863 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
4 Hb_003159_070 0.2156192359 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
5 Hb_029510_080 0.2170893989 - - -
6 Hb_003057_030 0.2171382103 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
7 Hb_177772_010 0.2187804429 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
8 Hb_000649_260 0.2224742757 - - uncharacterized LOC105634108 [Jatropha curcas]
9 Hb_002809_090 0.2252451531 - - -
10 Hb_161728_010 0.2270907308 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
11 Hb_051731_010 0.2428919748 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_006449_060 0.2442393632 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_010532_010 0.2459244671 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
14 Hb_166210_010 0.2522871569 - - conserved hypothetical protein [Ricinus communis]
15 Hb_142051_010 0.2582408027 - - -
16 Hb_036731_010 0.2597911598 - - -
17 Hb_089299_010 0.2632660139 - - conserved hypothetical protein [Ricinus communis]
18 Hb_108557_010 0.2659623041 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_133191_010 0.2686496399 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
20 Hb_031474_020 0.2701323293 - - -

Gene co-expression network

sample Hb_000832_340 Hb_000832_340 Hb_005207_010 Hb_005207_010 Hb_000832_340--Hb_005207_010 Hb_002233_050 Hb_002233_050 Hb_000832_340--Hb_002233_050 Hb_003159_070 Hb_003159_070 Hb_000832_340--Hb_003159_070 Hb_029510_080 Hb_029510_080 Hb_000832_340--Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_000832_340--Hb_003057_030 Hb_177772_010 Hb_177772_010 Hb_000832_340--Hb_177772_010 Hb_005207_010--Hb_002233_050 Hb_000649_260 Hb_000649_260 Hb_005207_010--Hb_000649_260 Hb_006449_060 Hb_006449_060 Hb_005207_010--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_005207_010--Hb_010532_010 Hb_166210_010 Hb_166210_010 Hb_005207_010--Hb_166210_010 Hb_005207_010--Hb_029510_080 Hb_002233_050--Hb_166210_010 Hb_002233_050--Hb_006449_060 Hb_002233_050--Hb_010532_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_002233_050--Hb_000649_260 Hb_003159_070--Hb_177772_010 Hb_003159_070--Hb_000649_260 Hb_003159_070--Hb_005207_010 Hb_003159_070--Hb_002233_050 Hb_003159_070--Hb_003057_030 Hb_003159_070--Hb_029510_080 Hb_029510_080--Hb_003057_030 Hb_002809_090 Hb_002809_090 Hb_029510_080--Hb_002809_090 Hb_161728_010 Hb_161728_010 Hb_029510_080--Hb_161728_010 Hb_142051_010 Hb_142051_010 Hb_029510_080--Hb_142051_010 Hb_029510_080--Hb_177772_010 Hb_089299_010 Hb_089299_010 Hb_029510_080--Hb_089299_010 Hb_003057_030--Hb_002809_090 Hb_003057_030--Hb_161728_010 Hb_003057_030--Hb_142051_010 Hb_003057_030--Hb_177772_010 Hb_003057_030--Hb_089299_010 Hb_177772_010--Hb_161728_010 Hb_177772_010--Hb_002809_090 Hb_177772_010--Hb_005207_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.19389 0 0 0.323904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28229 1.45245

CAGE analysis