Hb_006449_060

Information

Type -
Description -
Location Contig6449: 79215-80633
Sequence    

Annotation

kegg
ID zma:103655276
description uncharacterized LOC103655276
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID Q2QU62
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g17350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006449_060 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_010532_010 0.0029506 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
3 Hb_000649_260 0.0892064226 - - uncharacterized LOC105634108 [Jatropha curcas]
4 Hb_002233_050 0.0979250343 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
5 Hb_018746_010 0.103195313 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
6 Hb_005207_010 0.1049919469 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
7 Hb_001514_140 0.1075953572 - - -
8 Hb_166210_010 0.1088177186 - - conserved hypothetical protein [Ricinus communis]
9 Hb_036731_010 0.1269048054 - - -
10 Hb_002762_010 0.142559384 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
11 Hb_005714_120 0.1530336207 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_043960_010 0.1560487535 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_010678_010 0.1736280049 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
14 Hb_003159_070 0.1759375282 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
15 Hb_002121_070 0.1791221981 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005337_010 0.1918645731 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
17 Hb_005622_030 0.198701118 - - transferase, putative [Ricinus communis]
18 Hb_000362_100 0.2020426224 - - -
19 Hb_001089_010 0.2130766068 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
20 Hb_002876_100 0.2138568941 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]

Gene co-expression network

sample Hb_006449_060 Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_006449_060--Hb_010532_010 Hb_000649_260 Hb_000649_260 Hb_006449_060--Hb_000649_260 Hb_002233_050 Hb_002233_050 Hb_006449_060--Hb_002233_050 Hb_018746_010 Hb_018746_010 Hb_006449_060--Hb_018746_010 Hb_005207_010 Hb_005207_010 Hb_006449_060--Hb_005207_010 Hb_001514_140 Hb_001514_140 Hb_006449_060--Hb_001514_140 Hb_010532_010--Hb_000649_260 Hb_010532_010--Hb_002233_050 Hb_010532_010--Hb_018746_010 Hb_010532_010--Hb_001514_140 Hb_010532_010--Hb_005207_010 Hb_003159_070 Hb_003159_070 Hb_000649_260--Hb_003159_070 Hb_000649_260--Hb_005207_010 Hb_000649_260--Hb_002233_050 Hb_177772_010 Hb_177772_010 Hb_000649_260--Hb_177772_010 Hb_002233_050--Hb_005207_010 Hb_166210_010 Hb_166210_010 Hb_002233_050--Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_018746_010--Hb_001514_140 Hb_002762_010 Hb_002762_010 Hb_018746_010--Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_018746_010--Hb_043960_010 Hb_018746_010--Hb_166210_010 Hb_018746_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_018746_010--Hb_005714_120 Hb_005207_010--Hb_166210_010 Hb_029510_080 Hb_029510_080 Hb_005207_010--Hb_029510_080 Hb_001514_140--Hb_043960_010 Hb_001514_140--Hb_002762_010 Hb_001514_140--Hb_166210_010 Hb_001514_140--Hb_036731_010 Hb_001514_140--Hb_005714_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0653853 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0316151 0.0804985

CAGE analysis