Hb_003159_070

Information

Type -
Description -
Location Contig3159: 131573-131791
Sequence    

Annotation

kegg
ID tcc:TCM_035723
description hypothetical protein
nr
ID XP_007019610.1
description Uncharacterized protein TCM_035723 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FHM0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_070 0.0 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
2 Hb_177772_010 0.0707677748 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
3 Hb_000649_260 0.0932753702 - - uncharacterized LOC105634108 [Jatropha curcas]
4 Hb_005207_010 0.1231271866 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
5 Hb_002233_050 0.1446758736 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
6 Hb_003057_030 0.1491908396 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
7 Hb_029510_080 0.1519067313 - - -
8 Hb_161728_010 0.1527529258 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
9 Hb_002809_090 0.1720714504 - - -
10 Hb_006449_060 0.1759375282 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_010532_010 0.1785206871 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
12 Hb_138229_010 0.2051933108 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
13 Hb_005831_010 0.2118114913 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
14 Hb_000832_340 0.2156192359 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
15 Hb_005622_030 0.2201076813 - - transferase, putative [Ricinus communis]
16 Hb_001019_210 0.2286171079 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
17 Hb_166210_010 0.2299639087 - - conserved hypothetical protein [Ricinus communis]
18 Hb_142051_010 0.233329947 - - -
19 Hb_010678_010 0.2386034096 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
20 Hb_004519_010 0.2392983557 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003159_070 Hb_003159_070 Hb_177772_010 Hb_177772_010 Hb_003159_070--Hb_177772_010 Hb_000649_260 Hb_000649_260 Hb_003159_070--Hb_000649_260 Hb_005207_010 Hb_005207_010 Hb_003159_070--Hb_005207_010 Hb_002233_050 Hb_002233_050 Hb_003159_070--Hb_002233_050 Hb_003057_030 Hb_003057_030 Hb_003159_070--Hb_003057_030 Hb_029510_080 Hb_029510_080 Hb_003159_070--Hb_029510_080 Hb_161728_010 Hb_161728_010 Hb_177772_010--Hb_161728_010 Hb_177772_010--Hb_003057_030 Hb_177772_010--Hb_029510_080 Hb_002809_090 Hb_002809_090 Hb_177772_010--Hb_002809_090 Hb_177772_010--Hb_005207_010 Hb_006449_060 Hb_006449_060 Hb_000649_260--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_000649_260--Hb_010532_010 Hb_000649_260--Hb_005207_010 Hb_000649_260--Hb_002233_050 Hb_000649_260--Hb_177772_010 Hb_005207_010--Hb_002233_050 Hb_005207_010--Hb_006449_060 Hb_005207_010--Hb_010532_010 Hb_166210_010 Hb_166210_010 Hb_005207_010--Hb_166210_010 Hb_005207_010--Hb_029510_080 Hb_002233_050--Hb_166210_010 Hb_002233_050--Hb_006449_060 Hb_002233_050--Hb_010532_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_003057_030--Hb_029510_080 Hb_003057_030--Hb_002809_090 Hb_003057_030--Hb_161728_010 Hb_142051_010 Hb_142051_010 Hb_003057_030--Hb_142051_010 Hb_089299_010 Hb_089299_010 Hb_003057_030--Hb_089299_010 Hb_029510_080--Hb_002809_090 Hb_029510_080--Hb_161728_010 Hb_029510_080--Hb_142051_010 Hb_029510_080--Hb_089299_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.31777 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.12595 0.969039

CAGE analysis