Hb_108557_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig108557: 4256-7660
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09900g
description hypothetical protein
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID U5FEX7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108557_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_004228_040 0.2059529024 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_002090_010 0.2160609292 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
4 Hb_002888_080 0.2203685846 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
5 Hb_157029_010 0.2518836079 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
6 Hb_031474_020 0.2573746949 - - -
7 Hb_064106_010 0.2623017559 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
8 Hb_000832_340 0.2659623041 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
9 Hb_133191_010 0.2704448593 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_060822_010 0.275643391 - - -
11 Hb_001538_040 0.2838341459 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
12 Hb_005436_030 0.2850488705 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
13 Hb_000832_010 0.2887084756 - - hypothetical protein VITISV_005044 [Vitis vinifera]
14 Hb_023547_020 0.2888660747 - - conserved hypothetical protein [Ricinus communis]
15 Hb_100332_020 0.2903683375 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
16 Hb_001652_040 0.2908364922 - - PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]
17 Hb_010812_140 0.291186751 - - protein binding protein, putative [Ricinus communis]
18 Hb_014988_030 0.2912922608 - - hypothetical protein VITISV_006810 [Vitis vinifera]
19 Hb_000454_150 0.2967247549 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
20 Hb_000703_180 0.3003358496 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_108557_010 Hb_108557_010 Hb_004228_040 Hb_004228_040 Hb_108557_010--Hb_004228_040 Hb_002090_010 Hb_002090_010 Hb_108557_010--Hb_002090_010 Hb_002888_080 Hb_002888_080 Hb_108557_010--Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_108557_010--Hb_157029_010 Hb_031474_020 Hb_031474_020 Hb_108557_010--Hb_031474_020 Hb_064106_010 Hb_064106_010 Hb_108557_010--Hb_064106_010 Hb_001652_040 Hb_001652_040 Hb_004228_040--Hb_001652_040 Hb_004228_040--Hb_002888_080 Hb_004228_040--Hb_157029_010 Hb_001225_060 Hb_001225_060 Hb_004228_040--Hb_001225_060 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020 Hb_094002_010 Hb_094002_010 Hb_002090_010--Hb_094002_010 Hb_008055_030 Hb_008055_030 Hb_002090_010--Hb_008055_030 Hb_005595_030 Hb_005595_030 Hb_002090_010--Hb_005595_030 Hb_001880_020 Hb_001880_020 Hb_002090_010--Hb_001880_020 Hb_000418_160 Hb_000418_160 Hb_002090_010--Hb_000418_160 Hb_002888_080--Hb_157029_010 Hb_100332_020 Hb_100332_020 Hb_002888_080--Hb_100332_020 Hb_000832_010 Hb_000832_010 Hb_002888_080--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002888_080--Hb_001871_030 Hb_175841_010 Hb_175841_010 Hb_157029_010--Hb_175841_010 Hb_000130_070 Hb_000130_070 Hb_157029_010--Hb_000130_070 Hb_157029_010--Hb_001652_040 Hb_002003_120 Hb_002003_120 Hb_031474_020--Hb_002003_120 Hb_142051_010 Hb_142051_010 Hb_031474_020--Hb_142051_010 Hb_003297_040 Hb_003297_040 Hb_031474_020--Hb_003297_040 Hb_008489_010 Hb_008489_010 Hb_031474_020--Hb_008489_010 Hb_000832_340 Hb_000832_340 Hb_031474_020--Hb_000832_340 Hb_003494_180 Hb_003494_180 Hb_064106_010--Hb_003494_180 Hb_002845_020 Hb_002845_020 Hb_064106_010--Hb_002845_020 Hb_005436_030 Hb_005436_030 Hb_064106_010--Hb_005436_030 Hb_023547_020 Hb_023547_020 Hb_064106_010--Hb_023547_020 Hb_001538_040 Hb_001538_040 Hb_064106_010--Hb_001538_040 Hb_016637_020 Hb_016637_020 Hb_064106_010--Hb_016637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0101844 0.0160601 0 0 0.0179681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0438345 0.0387623

CAGE analysis