Hb_175841_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig175841: 103-762
Sequence    

Annotation

kegg
ID pop:POPTR_0005s043602
description hypothetical protein
nr
ID XP_012089461.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
swissprot
ID O22727
description Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1
trembl
ID A0A067JI02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23409 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at1g61190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175841_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
2 Hb_001087_010 0.1793660115 - - PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
3 Hb_000668_110 0.2050115534 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
4 Hb_001631_100 0.2118707858 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001496_120 0.2148411115 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_000800_110 0.2180868181 - - NAD dehydrogenase, putative [Ricinus communis]
7 Hb_000454_150 0.2195038479 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
8 Hb_000359_220 0.2197154587 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
9 Hb_098315_090 0.2213571919 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
10 Hb_007576_180 0.2244515882 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
11 Hb_001266_120 0.2247625011 - - auxilin, putative [Ricinus communis]
12 Hb_000130_070 0.2254866946 - - hypothetical protein JCGZ_14738 [Jatropha curcas]
13 Hb_000803_220 0.2278401182 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
14 Hb_001516_050 0.2292356899 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
15 Hb_000992_020 0.2298278037 - - monoxygenase, putative [Ricinus communis]
16 Hb_001789_020 0.2342067973 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
17 Hb_007943_150 0.2351645418 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_000906_070 0.2369827071 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
19 Hb_000963_090 0.2386989168 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
20 Hb_001476_090 0.238893001 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_175841_010 Hb_175841_010 Hb_001087_010 Hb_001087_010 Hb_175841_010--Hb_001087_010 Hb_000668_110 Hb_000668_110 Hb_175841_010--Hb_000668_110 Hb_001631_100 Hb_001631_100 Hb_175841_010--Hb_001631_100 Hb_001496_120 Hb_001496_120 Hb_175841_010--Hb_001496_120 Hb_000800_110 Hb_000800_110 Hb_175841_010--Hb_000800_110 Hb_000454_150 Hb_000454_150 Hb_175841_010--Hb_000454_150 Hb_000906_070 Hb_000906_070 Hb_001087_010--Hb_000906_070 Hb_000992_020 Hb_000992_020 Hb_001087_010--Hb_000992_020 Hb_010984_010 Hb_010984_010 Hb_001087_010--Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_001087_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_001087_010--Hb_007894_190 Hb_000359_220 Hb_000359_220 Hb_001087_010--Hb_000359_220 Hb_000922_260 Hb_000922_260 Hb_000668_110--Hb_000922_260 Hb_000256_110 Hb_000256_110 Hb_000668_110--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_000668_110--Hb_002026_070 Hb_003490_050 Hb_003490_050 Hb_000668_110--Hb_003490_050 Hb_003549_050 Hb_003549_050 Hb_000668_110--Hb_003549_050 Hb_011853_010 Hb_011853_010 Hb_000668_110--Hb_011853_010 Hb_000261_410 Hb_000261_410 Hb_001631_100--Hb_000261_410 Hb_001631_100--Hb_000800_110 Hb_000575_100 Hb_000575_100 Hb_001631_100--Hb_000575_100 Hb_013459_010 Hb_013459_010 Hb_001631_100--Hb_013459_010 Hb_011616_020 Hb_011616_020 Hb_001631_100--Hb_011616_020 Hb_003632_030 Hb_003632_030 Hb_001631_100--Hb_003632_030 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_073973_020 Hb_073973_020 Hb_001496_120--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_001476_090 Hb_001476_090 Hb_000454_150--Hb_001476_090 Hb_002893_190 Hb_002893_190 Hb_000454_150--Hb_002893_190 Hb_002217_390 Hb_002217_390 Hb_000454_150--Hb_002217_390 Hb_000732_180 Hb_000732_180 Hb_000454_150--Hb_000732_180 Hb_000454_150--Hb_002888_060 Hb_031862_200 Hb_031862_200 Hb_000454_150--Hb_031862_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.660082 1.83188 2.68676 1.059 1.67336 2.53594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0878946 0 0.122417 4.8765 6.23783

CAGE analysis