Hb_000732_180

Information

Type -
Description -
Location Contig732: 192352-193108
Sequence    

Annotation

kegg
ID tcc:TCM_030007
description hypothetical protein
nr
ID XP_007025819.1
description Uncharacterized protein TCM_030007 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GFU0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_030007 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_180 0.0 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
2 Hb_142522_040 0.1086855922 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001345_040 0.1254880651 - - hypothetical protein VITISV_015004 [Vitis vinifera]
4 Hb_116784_020 0.1258680904 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_006588_020 0.1269270849 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_001366_260 0.1327201772 - - T4.15 [Malus x robusta]
7 Hb_002845_020 0.1338523227 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
8 Hb_001866_100 0.1339315294 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
9 Hb_000049_170 0.1360716621 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009434_060 0.1371976447 - - T4.15 [Malus x robusta]
11 Hb_000820_100 0.1395709517 - - RNA-directed DNA polymerase [Arachis hypogaea]
12 Hb_001468_040 0.1424920833 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
13 Hb_000173_110 0.1457586236 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
14 Hb_005092_090 0.1501739137 - - cold regulated protein [Manihot esculenta]
15 Hb_001301_010 0.1512059457 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_000027_230 0.1553775858 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_004312_020 0.1564697507 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007035_010 0.1568092471 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
19 Hb_000352_060 0.1589073731 - - RNA-directed DNA polymerase [Arachis hypogaea]
20 Hb_000009_390 0.1592848648 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000732_180 Hb_000732_180 Hb_142522_040 Hb_142522_040 Hb_000732_180--Hb_142522_040 Hb_001345_040 Hb_001345_040 Hb_000732_180--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_000732_180--Hb_116784_020 Hb_006588_020 Hb_006588_020 Hb_000732_180--Hb_006588_020 Hb_001366_260 Hb_001366_260 Hb_000732_180--Hb_001366_260 Hb_002845_020 Hb_002845_020 Hb_000732_180--Hb_002845_020 Hb_142522_040--Hb_116784_020 Hb_000820_100 Hb_000820_100 Hb_142522_040--Hb_000820_100 Hb_142522_040--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_142522_040--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_142522_040--Hb_000173_110 Hb_001345_040--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_001345_040--Hb_188075_010 Hb_005092_090 Hb_005092_090 Hb_001345_040--Hb_005092_090 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_067472_010 Hb_067472_010 Hb_116784_020--Hb_067472_010 Hb_116784_020--Hb_001366_260 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_006588_020--Hb_005092_090 Hb_001866_100 Hb_001866_100 Hb_006588_020--Hb_001866_100 Hb_007035_010 Hb_007035_010 Hb_006588_020--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006588_020--Hb_000049_170 Hb_000009_390 Hb_000009_390 Hb_006588_020--Hb_000009_390 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_001366_260--Hb_000173_110 Hb_001366_260--Hb_005092_090 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_002845_020--Hb_007205_020 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.31984 1.46426 0.499124 0.176461 0.056268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.68615 4.68162

CAGE analysis