Hb_000261_410

Information

Type -
Description -
Location Contig261: 354891-368501
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08220g
description POPTRDRAFT_668390; hypothetical protein
nr
ID XP_012071270.1
description PREDICTED: myosin-binding protein 3 [Jatropha curcas]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID A0A067L4E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01127 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27311: 359645-363661 , PASA_asmbl_27312: 365980-368458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_410 0.0 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
2 Hb_000082_070 0.106393171 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
3 Hb_000347_560 0.1119682361 - - -
4 Hb_002631_140 0.116431326 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
5 Hb_001381_050 0.1174081578 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_001789_020 0.1206161695 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
7 Hb_022250_100 0.1225016731 - - calnexin, putative [Ricinus communis]
8 Hb_004306_030 0.1250698225 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
9 Hb_000284_120 0.1251460672 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
10 Hb_004064_050 0.1265357888 - - Structural maintenance of chromosome, putative [Ricinus communis]
11 Hb_000575_100 0.126706575 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
12 Hb_001431_120 0.1281246555 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
13 Hb_001194_020 0.1289531408 - - microtubule associated protein xmap215, putative [Ricinus communis]
14 Hb_089246_010 0.1302673512 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
15 Hb_007035_040 0.1303198512 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
16 Hb_000320_470 0.1306721086 - - calcium-dependent protein kinase [Hevea brasiliensis]
17 Hb_000820_150 0.131425668 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
18 Hb_162275_040 0.133668478 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009486_080 0.1342649361 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
20 Hb_007456_040 0.1346283033 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]

Gene co-expression network

sample Hb_000261_410 Hb_000261_410 Hb_000082_070 Hb_000082_070 Hb_000261_410--Hb_000082_070 Hb_000347_560 Hb_000347_560 Hb_000261_410--Hb_000347_560 Hb_002631_140 Hb_002631_140 Hb_000261_410--Hb_002631_140 Hb_001381_050 Hb_001381_050 Hb_000261_410--Hb_001381_050 Hb_001789_020 Hb_001789_020 Hb_000261_410--Hb_001789_020 Hb_022250_100 Hb_022250_100 Hb_000261_410--Hb_022250_100 Hb_000082_070--Hb_002631_140 Hb_000035_170 Hb_000035_170 Hb_000082_070--Hb_000035_170 Hb_160459_040 Hb_160459_040 Hb_000082_070--Hb_160459_040 Hb_162275_040 Hb_162275_040 Hb_000082_070--Hb_162275_040 Hb_000086_440 Hb_000086_440 Hb_000082_070--Hb_000086_440 Hb_009771_110 Hb_009771_110 Hb_000082_070--Hb_009771_110 Hb_000347_560--Hb_162275_040 Hb_008484_010 Hb_008484_010 Hb_000347_560--Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_000347_560--Hb_041828_010 Hb_004701_050 Hb_004701_050 Hb_000347_560--Hb_004701_050 Hb_000347_560--Hb_002631_140 Hb_000069_570 Hb_000069_570 Hb_000347_560--Hb_000069_570 Hb_002631_140--Hb_009771_110 Hb_002631_140--Hb_160459_040 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_000088_050 Hb_000088_050 Hb_001381_050--Hb_000088_050 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180 Hb_000562_050 Hb_000562_050 Hb_001789_020--Hb_000562_050 Hb_158092_080 Hb_158092_080 Hb_001789_020--Hb_158092_080 Hb_003398_100 Hb_003398_100 Hb_001789_020--Hb_003398_100 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270 Hb_005701_090 Hb_005701_090 Hb_001789_020--Hb_005701_090 Hb_006355_020 Hb_006355_020 Hb_022250_100--Hb_006355_020 Hb_000041_300 Hb_000041_300 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_022250_100--Hb_000562_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.511291 1.08704 1.76166 1.10556 1.3404 1.97187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431721 0.270261 0.593872 1.4858 2.18691

CAGE analysis