Hb_001225_060

Information

Type -
Description -
Location Contig1225: 92138-93599
Sequence    

Annotation

kegg
ID tcc:TCM_004519
description hypothetical protein
nr
ID CDY43313.1
description BnaC03g58850D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078I2F6
description BnaC03g58850D protein OS=Brassica napus GN=BnaC03g58850D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_060 0.0 - - BnaC03g58850D [Brassica napus]
2 Hb_000363_470 0.1423389513 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
3 Hb_000291_320 0.2054524627 - - Protein MLO, putative [Ricinus communis]
4 Hb_020581_050 0.2085754409 - - -
5 Hb_102011_010 0.2327743099 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000177_120 0.2384379832 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
7 Hb_004228_040 0.2466213341 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_029508_030 0.2472295771 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
9 Hb_124385_010 0.2481167844 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
10 Hb_001675_230 0.2500111466 - - scab resistance family protein [Populus trichocarpa]
11 Hb_004162_040 0.2512632739 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
12 Hb_002740_170 0.2536665886 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
13 Hb_000512_040 0.2560106529 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_001252_040 0.2565170705 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_110218_010 0.2594409967 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
16 Hb_000412_060 0.260998581 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
17 Hb_000243_110 0.2616219623 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
18 Hb_003878_100 0.2628898843 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
19 Hb_011552_020 0.2650767479 - - hypothetical protein F383_28301 [Gossypium arboreum]
20 Hb_001709_070 0.2659058467 - - carbohydrate binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001225_060 Hb_001225_060 Hb_000363_470 Hb_000363_470 Hb_001225_060--Hb_000363_470 Hb_000291_320 Hb_000291_320 Hb_001225_060--Hb_000291_320 Hb_020581_050 Hb_020581_050 Hb_001225_060--Hb_020581_050 Hb_102011_010 Hb_102011_010 Hb_001225_060--Hb_102011_010 Hb_000177_120 Hb_000177_120 Hb_001225_060--Hb_000177_120 Hb_004228_040 Hb_004228_040 Hb_001225_060--Hb_004228_040 Hb_000363_470--Hb_020581_050 Hb_020581_020 Hb_020581_020 Hb_000363_470--Hb_020581_020 Hb_181968_010 Hb_181968_010 Hb_000363_470--Hb_181968_010 Hb_144004_010 Hb_144004_010 Hb_000363_470--Hb_144004_010 Hb_137695_010 Hb_137695_010 Hb_000363_470--Hb_137695_010 Hb_114025_010 Hb_114025_010 Hb_000291_320--Hb_114025_010 Hb_008080_050 Hb_008080_050 Hb_000291_320--Hb_008080_050 Hb_001856_060 Hb_001856_060 Hb_000291_320--Hb_001856_060 Hb_006120_020 Hb_006120_020 Hb_000291_320--Hb_006120_020 Hb_000149_120 Hb_000149_120 Hb_000291_320--Hb_000149_120 Hb_002542_090 Hb_002542_090 Hb_000291_320--Hb_002542_090 Hb_011552_020 Hb_011552_020 Hb_020581_050--Hb_011552_020 Hb_108884_020 Hb_108884_020 Hb_020581_050--Hb_108884_020 Hb_006475_020 Hb_006475_020 Hb_020581_050--Hb_006475_020 Hb_001864_010 Hb_001864_010 Hb_020581_050--Hb_001864_010 Hb_029508_030 Hb_029508_030 Hb_020581_050--Hb_029508_030 Hb_000286_190 Hb_000286_190 Hb_020581_050--Hb_000286_190 Hb_001485_010 Hb_001485_010 Hb_102011_010--Hb_001485_010 Hb_053125_010 Hb_053125_010 Hb_102011_010--Hb_053125_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_136880_010 Hb_136880_010 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010 Hb_000177_120--Hb_000286_190 Hb_006326_030 Hb_006326_030 Hb_000177_120--Hb_006326_030 Hb_000177_120--Hb_029508_030 Hb_007894_260 Hb_007894_260 Hb_000177_120--Hb_007894_260 Hb_006569_110 Hb_006569_110 Hb_000177_120--Hb_006569_110 Hb_000254_150 Hb_000254_150 Hb_000177_120--Hb_000254_150 Hb_001652_040 Hb_001652_040 Hb_004228_040--Hb_001652_040 Hb_108557_010 Hb_108557_010 Hb_004228_040--Hb_108557_010 Hb_002888_080 Hb_002888_080 Hb_004228_040--Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_004228_040--Hb_157029_010 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.559307 0.0626475 0 0.0753981 0.145386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.14083 0.263634

CAGE analysis